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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • mitochondrion 2
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY09631 Canola cytosol 14.35 61.9
Bra008697.1-P Field mustard plastid 21.85 55.0
AT3G58210.1 Thale cress plastid 38.63 53.03
CDX69523 Canola cytosol 32.67 52.48
AT3G44790.1 Thale cress cytosol 35.32 49.38
AT3G58350.1 Thale cress cytosol 31.57 47.51
AT3G58200.1 Thale cress cytosol 33.33 47.34
CDX90477 Canola cytosol 28.26 47.06
Bra012666.1-P Field mustard cytosol 28.26 47.06
AT2G05400.3 Thale cress cytosol 22.52 47.0
AT3G58360.1 Thale cress cytosol 30.68 46.64
AT3G58370.1 Thale cress cytosol 30.46 45.7
AT2G05410.2 Thale cress cytosol 30.24 45.21
AT3G44800.1 Thale cress cytosol 33.77 44.74
AT1G31380.1 Thale cress cytosol 17.0 44.0
AT2G05420.1 Thale cress cytosol 28.7 43.77
AT3G58270.3 Thale cress cytosol 33.11 43.73
AT2G01790.1 Thale cress cytosol 25.83 43.49
AT3G58340.1 Thale cress cytosol 31.13 43.38
AT3G58410.1 Thale cress cytosol 30.91 42.68
AT3G58250.1 Thale cress cytosol 29.8 42.59
AT3G58400.1 Thale cress extracellular 27.37 42.32
AT3G27040.1 Thale cress cytosol 25.17 42.07
AT1G31390.1 Thale cress cytosol 24.72 41.79
AT1G31400.1 Thale cress cytosol 25.39 41.37
AT3G58260.1 Thale cress cytosol, golgi, mitochondrion, plastid 28.7 40.5
AT3G58380.1 Thale cress cytosol 26.93 39.74
AT3G29580.1 Thale cress cytosol 26.71 39.54
AT3G58320.1 Thale cress nucleus 19.43 39.29
AT3G44805.1 Thale cress cytosol 20.31 37.1
AT1G31370.1 Thale cress cytosol 15.45 36.27
AT3G58240.1 Thale cress cytosol 24.5 35.02
AT3G58430.1 Thale cress cytosol 30.46 29.3
AT3G58440.1 Thale cress cytosol 30.24 22.8
Protein Annotations
Gene3D:2.60.210.10MapMan:35.1EntrezGene:824991UniProt:A0A178V776ArrayExpress:AT3G58220EnsemblPlantsGene:AT3G58220
RefSeq:AT3G58220TAIR:AT3G58220RefSeq:AT3G58220-TAIR-GEnsemblPlants:AT3G58220.2TAIR:AT3G58220.2Unigene:At.26457
ncoils:CoilGO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:IPR002083InterPro:IPR008974
InterPro:MATH/TRAF_domRefSeq:NP_001118854.1ProteinID:OAP01614.1PFAM:PF00917PO:PO:0000293PFscan:PS50144
PANTHER:PTHR24007PANTHER:PTHR24007:SF12SMART:SM00061SUPFAM:SSF49599InterPro:TRAF-likeUniParc:UPI000173933E
SEG:seg:::::
Description
TRAF-like family protein [Source:TAIR;Acc:AT3G58220]
Coordinates
chr3:-:21564388..21566497
Molecular Weight (calculated)
52617.4 Da
IEP (calculated)
4.693
GRAVY (calculated)
-0.944
Length
453 amino acids
Sequence
(BLAST)
001: MGRIGSPLGK NEFSWVIKDF SSLGVRAIYS DEFVIGGCKW RLIAYPMGNR IKKYMSLYVE VADSKHLPSG WSINTELRME VVNHNLYKPS QQKYRKNLWF
101: DQKTPSWGYK TMIRHSKLSG EEGFLVSGEV TIVVKIDVYR VFGKVAAIEI SEEGSKEGYE YESEEVYKKE SEEGYKYESE EDYEKRPIER FEYESEAESK
201: KDYEERTRGG FEYESEPVSK KDYEERPRES FEYESEAESK KDSEEGSRER YEYESEEESK KDSENDCGEE SEKDSEEGSR PLKKIKRNDD GVKSNDSVNK
301: TQQVKETMDI NGFQVLPSQV TLVSRILKKY PDIALGFNAK NRHLRTACMN VLISLIETLC QSPQELSDED MDEADNALVY VQDAGFKVDW LDKKLKEVKE
401: KKVVEQTGKT RIQELEEELK EFKQKCLDRE ALLEKEKAKV LAARASLTLD DFV
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.