Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G44790.1 | Thale cress | cytosol | 56.45 | 43.21 |
| AT1G31380.1 | Thale cress | cytosol | 29.03 | 41.14 |
| AT2G05400.3 | Thale cress | cytosol | 35.08 | 40.09 |
| Bra008697.1-P | Field mustard | plastid | 29.03 | 40.0 |
| AT3G44800.1 | Thale cress | cytosol | 51.21 | 37.13 |
| CDY09631 | Canola | cytosol | 14.92 | 35.24 |
| AT1G31370.1 | Thale cress | cytosol | 25.81 | 33.16 |
| CDX69523 | Canola | cytosol | 37.5 | 32.98 |
| AT3G58210.1 | Thale cress | plastid | 41.53 | 31.21 |
| AT3G58200.1 | Thale cress | cytosol | 39.92 | 31.03 |
| CDX90477 | Canola | cytosol | 33.47 | 30.51 |
| Bra012666.1-P | Field mustard | cytosol | 33.47 | 30.51 |
| AT3G58410.1 | Thale cress | cytosol | 39.52 | 29.88 |
| AT3G58360.1 | Thale cress | cytosol | 35.08 | 29.19 |
| AT3G58270.3 | Thale cress | cytosol | 40.32 | 29.15 |
| AT3G58370.1 | Thale cress | cytosol | 34.68 | 28.48 |
| AT3G58320.1 | Thale cress | nucleus | 25.4 | 28.12 |
| AT3G58400.1 | Thale cress | extracellular | 32.66 | 27.65 |
| AT1G31390.1 | Thale cress | cytosol | 29.84 | 27.61 |
| AT2G05410.2 | Thale cress | cytosol | 33.06 | 27.06 |
| AT2G05420.1 | Thale cress | cytosol | 32.26 | 26.94 |
| AT3G58250.1 | Thale cress | cytosol | 34.27 | 26.81 |
| AT3G29580.1 | Thale cress | cytosol | 33.06 | 26.8 |
| AT1G31400.1 | Thale cress | cytosol | 29.84 | 26.62 |
| AT3G58350.1 | Thale cress | cytosol | 32.26 | 26.58 |
| AT3G58340.1 | Thale cress | cytosol | 34.68 | 26.46 |
| AT3G58260.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 33.87 | 26.17 |
| AT3G58380.1 | Thale cress | cytosol | 30.65 | 24.76 |
| AT3G27040.1 | Thale cress | cytosol | 26.61 | 24.35 |
| AT2G01790.1 | Thale cress | cytosol | 25.81 | 23.79 |
| AT3G58240.1 | Thale cress | cytosol | 28.63 | 22.4 |
| AT3G58220.2 | Thale cress | cytosol | 37.1 | 20.31 |
| AT3G58430.1 | Thale cress | cytosol | 37.5 | 19.75 |
| AT3G58440.1 | Thale cress | cytosol | 33.06 | 13.64 |
Protein Annotations
| MapMan:35.1 | EntrezGene:823614 | ProteinID:AEE77956.1 | ArrayExpress:AT3G44805 | EnsemblPlantsGene:AT3G44805 | RefSeq:AT3G44805 |
| TAIR:AT3G44805 | RefSeq:AT3G44805-TAIR-G | EnsemblPlants:AT3G44805.1 | TAIR:AT3G44805.1 | Unigene:At.53736 | ncoils:Coil |
| UniProt:F4J4A2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR002083 |
| InterPro:MATH/TRAF_dom | RefSeq:NP_680095.1 | PFscan:PS50144 | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 | UniParc:UPI00001636BD |
| SEG:seg | : | : | : | : | : |
Description
TRAF-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J4A2]
Coordinates
chr3:+:16350395..16351437
Molecular Weight (calculated)
28257.2 Da
IEP (calculated)
4.739
GRAVY (calculated)
-0.180
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MISLAKLNVR KGGFLVKNEV KIVVEVDVLQ VIGNLDVSEV SSHLHKETSS VDVNGFLVLP SQVESAKLIF ERHSDMALEF RAKNQYVRTS CMNVLLSLID
101: TLCQSLQDFS IDDLGQAERA LTYLKDSDFK VDWLERKLEE VKEKKIEEQI GKTRMQELEE EFESRELARI LLVASFLMTM QTDYCQQRLS YKEKLSCHGL
201: EEMLLLSELN AKEGGFLVNN EVKIIAEVDV LQVIGKLDVS ENTQPRKG
101: TLCQSLQDFS IDDLGQAERA LTYLKDSDFK VDWLERKLEE VKEKKIEEQI GKTRMQELEE EFESRELARI LLVASFLMTM QTDYCQQRLS YKEKLSCHGL
201: EEMLLLSELN AKEGGFLVNN EVKIIAEVDV LQVIGKLDVS ENTQPRKG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.