Factsheet for Bra008697.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003328.1-P	Field mustard	cytosol	42.78	55.8
Bra014573.1-P	Field mustard	cytosol, extracellular, plastid	29.44	50.48
CDX69523	Canola	cytosol	70.0	44.68
Bra014571.1-P	Field mustard	cytosol	47.22	44.5
Bra012666.1-P	Field mustard	cytosol	48.89	32.35
AT3G58210.1	Thale cress	plastid	57.78	31.52
Bra014574.1-P	Field mustard	cytosol	47.78	30.28
AT3G44790.1	Thale cress	cytosol	52.78	29.32
AT3G44805.1	Thale cress	cytosol	40.0	29.03
Bra003329.1-P	Field mustard	cytosol	47.22	28.91
Bra014575.1-P	Field mustard	cytosol	46.11	27.85
Bra014577.1-P	Field mustard	cytosol	39.44	25.91
AT3G58200.1	Thale cress	cytosol	45.56	25.71
AT3G44800.1	Thale cress	cytosol	46.67	24.56
Bra007390.1-P	Field mustard	cytosol	32.22	23.58
Bra007389.1-P	Field mustard	cytosol	40.56	22.88
Bra007388.1-P	Field mustard	cytosol	38.33	22.7
Bra007386.1-P	Field mustard	cytosol	40.0	22.09
AT3G58220.2	Thale cress	cytosol	55.0	21.85
Bra007392.1-P	Field mustard	cytosol	38.89	21.47
Bra014088.1-P	Field mustard	cytosol	30.56	20.45
Bra014572.1-P	Field mustard	cytosol	48.33	19.42
Bra003331.1-P	Field mustard	cytosol	35.0	19.33
Bra003330.1-P	Field mustard	cytosol	44.44	16.7
Bra007387.1-P	Field mustard	cytosol	38.33	14.65
Bra003332.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	38.89	10.43
Bra003337.1-P	Field mustard	nucleus	31.11	9.67

Protein Annotations

EnsemblPlants:Bra008697.1	EnsemblPlants:Bra008697.1-P	EnsemblPlantsGene:Bra008697	ncoils:Coil	PANTHER:PTHR24007	PANTHER:PTHR24007:SF12
SEG:seg	UniParc:UPI0002544E0A	UniProt:M4CWV0	MapMan:35.1	:	:

Description

AT3G58220 (E=6e-033) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58210.1); Has 9980 Blast hits to 5896 proteins in 419 species: Archae - 26; Bacteria - 1150; Metazoa - 2787; Fungi - 807; Plants - 643; Viruses - 139; Other Eukaryotes - 4428 (source: NCBI BLink).

Coordinates

chrA10:-:13437066..13439190

Molecular Weight (calculated)

20432.7 Da

IEP (calculated)

5.438

GRAVY (calculated)

-0.362

Length

180 amino acids

Sequence
(BLAST)

001: MGVLSSRSAS STLSQLHCFV GMVSEVEIQK KEETFYDLVA LMKIQEERVS KVVVKLVNRI FEKHPDIALQ FRAKNQHLRT ACMTVLLSLI ETLCQSPQEL
101: SSEDLVEAQN ALAHVKDAGF KVDWLEEKLE KVKGKKEEEQ TGEARMQELE EELKDLKQKC SEIEASLEKE KAKVSAARII

Best Arabidopsis Sequence Match ( AT3G58410.1 )
(BLAST)

001: MNLLFFLQVL QFDQEESFTT SMTKQVGKKF AWVIKNFSSL QCKKFYSVPF QIGDCKWRLS IYPKGNNCDY LSLFLEVADF KSLPSGWRRY VKLRLYIVKQ
101: EMWGWGFLYM LPLTKLHDEK EGFLVNGELM IVAEVDALGF IDPLNESEES EDPTQPLKKI KLNDDGAVSS DLLEEASPRK ESMEVNGFQV LPSQVESVRL
201: IFERHPDIAS EFRAKNQYLR KACMDFLLSL VETLCQSLQE FSNEDLVEAD IALTYLKDAG FKVDWLEKKL DQVRDKKEKE RSCLAKLQET EETLLKLKQK
301: CTELDALMDT EKAELSAIRT PLSFEDVV

Arabidopsis Description

TRAF-like family protein [Source:TAIR;Acc:AT3G58410]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.