Factsheet for Bra007386.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06047	Canola	cytosol	100.0	100.0
Bra007388.1-P	Field mustard	cytosol	74.23	79.61
Bra007389.1-P	Field mustard	cytosol	74.23	75.86
AT3G58370.1	Thale cress	cytosol	53.37	57.62
Bra003328.1-P	Field mustard	cytosol	21.17	50.0
Bra014573.1-P	Field mustard	cytosol, extracellular, plastid	15.64	48.57
Bra007390.1-P	Field mustard	cytosol	36.5	48.37
AT3G58380.1	Thale cress	cytosol	43.87	46.58
Bra014574.1-P	Field mustard	cytosol	40.49	46.48
Bra014577.1-P	Field mustard	cytosol	38.34	45.62
Bra003329.1-P	Field mustard	cytosol	41.1	45.58
Bra014575.1-P	Field mustard	cytosol	41.1	44.97
Bra007387.1-P	Field mustard	cytosol	63.8	44.16
Bra012666.1-P	Field mustard	cytosol	36.5	43.75
Bra014571.1-P	Field mustard	cytosol	25.15	42.93
Bra014088.1-P	Field mustard	cytosol	34.97	42.38
Bra007392.1-P	Field mustard	cytosol	41.41	41.41
Bra008697.1-P	Field mustard	plastid	22.09	40.0
Bra003331.1-P	Field mustard	cytosol	37.12	37.12
Bra014572.1-P	Field mustard	cytosol	44.17	32.14
Bra003330.1-P	Field mustard	cytosol	43.56	29.65
Bra003332.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	38.65	18.78
Bra003337.1-P	Field mustard	nucleus	32.82	18.48

Protein Annotations

Gene3D:2.60.210.10	MapMan:35.1	EnsemblPlantsGene:Bra007386	EnsemblPlants:Bra007386.1	EnsemblPlants:Bra007386.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	UniProt:M4CT44
InterPro:MATH/TRAF_dom	PFAM:PF00917	PFAM:PF05278	InterPro:PLipase-like	PFscan:PS50144	PANTHER:PTHR24007
PANTHER:PTHR24007:SF12	SMART:SM00061	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI0002542DCE	SEG:seg

Description

AT3G58210 (E=5e-077) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA09:+:28952262..28953580

Molecular Weight (calculated)

36702.7 Da

IEP (calculated)

4.751

GRAVY (calculated)

-0.302

Length

326 amino acids

Sequence
(BLAST)

001: MVSEADNKFT WVIKDFSSLQ SRRIYSDEFL IGGLKWCLIA YPKGSKVDCL SLYLGVADHE SLPLEWRRNT KFSLKVVNQF SDKSSILREA TEWFDQKTPS
101: FGFTKILPLA KLNANDGGFL VNDELKIVAE INILQVIGES NDESEGSQEV AVQPMKKTKM TEYGTGSSDL HKETSVGNET VDVNGFQVST LQVAYVRCIF
201: EKHPDLASKV RSNSQLLKST YMNVLLGLIE TLCQLPEKLS DDDLDEASAA VSYLTQVGFK VDWLEEKLEE VREKKTKVYT GKAQLQHMEE EFKVLNKKCL
301: ELKDLVEKQN ADVTAANVAL SFDDVV

Best Arabidopsis Sequence Match ( AT3G58370.1 )
(BLAST)

001: MESEEVDNKF TWVIKNFSTL QYDKIYSDPF VIGGCKWHLL AYPKGNKFNN SLSLYLVVDD ARALPCGWRR YAQFSLTIIN QLTDKLSQRG GTEKQNWFNQ
101: RNLGSGFTSM IPLPNLHAKN AGYLVNGEVK IVVEINDLEV IGKLDVSEET SPVKESIDVN GFQVLPSQVE SVKCIFERHP DFASKFRPKN RHLKSTYMTV
201: LLGLIKTLCQ LPEELTDDDL DEASVAVSYV ENGGLRLDWL EKKLAEVKAK KKKVETGKAR LQRAEEELQK LNQKCLELKA FLEKENADVS EANVPLSFED
301: VV

Arabidopsis Description

TRAF-like family protein [Source:TAIR;Acc:AT3G58370]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.