Factsheet for Bra014088.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17006	Canola	cytosol	89.96	92.72
AT2G05410.2	Thale cress	cytosol	52.79	46.86
AT2G05400.3	Thale cress	cytosol	37.55	46.54
AT2G05420.1	Thale cress	cytosol	50.56	45.79
Bra014573.1-P	Field mustard	cytosol, extracellular, plastid	17.1	43.81
Bra014575.1-P	Field mustard	cytosol	47.96	43.29
Bra014574.1-P	Field mustard	cytosol	45.35	42.96
Bra007388.1-P	Field mustard	cytosol	44.61	39.47
Bra003329.1-P	Field mustard	cytosol	43.12	39.46
Bra014571.1-P	Field mustard	cytosol	26.77	37.7
Bra007389.1-P	Field mustard	cytosol	42.01	35.42
Bra014577.1-P	Field mustard	cytosol	35.69	35.04
Bra007386.1-P	Field mustard	cytosol	42.38	34.97
Bra003328.1-P	Field mustard	cytosol	17.84	34.78
Bra012666.1-P	Field mustard	cytosol	34.94	34.56
Bra007390.1-P	Field mustard	cytosol	31.23	34.15
Bra007392.1-P	Field mustard	cytosol	38.66	31.9
Bra008697.1-P	Field mustard	plastid	20.45	30.56
Bra003331.1-P	Field mustard	cytosol	35.69	29.45
Bra003330.1-P	Field mustard	cytosol	50.93	28.6
Bra014572.1-P	Field mustard	cytosol	44.24	26.56
Bra007387.1-P	Field mustard	cytosol	44.61	25.48
Bra003332.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	39.41	15.8
Bra003337.1-P	Field mustard	nucleus	32.34	15.03

Protein Annotations

EnsemblPlants:Bra014088.1	EnsemblPlants:Bra014088.1-P	EnsemblPlantsGene:Bra014088	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	ncoils:Coil
PANTHER:PTHR24007	PANTHER:PTHR24007:SF12	PFAM:PF00917	PFscan:PS50144	SEG:seg	SMART:SM00061
SUPFAM:SSF49599	UniParc:UPI000254691B	UniProt:M4DC75	MapMan:35.1	:	:

Description

AT2G05420 (E=2e-025) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA08:+:3626672..3628530

Molecular Weight (calculated)

30772.3 Da

IEP (calculated)

8.187

GRAVY (calculated)

-0.319

Length

269 amino acids

Sequence
(BLAST)

001: MEKQSDKKIT WVIKTFSSLH SEKVHSDIFV VGRCRWCLKA YPKGNKKANH LSLYLAVANS EYLPFGWRRH AKFSFTVVNQ FSYKLSRLGG MISLSELHDK
101: EGFLVNREVK IVLKVDVLEV QGKVDVSEES LPVMETIDVN GFHVLPSQAL CQSPWEISKD DLPEEYAALS YLAAEGFQLD WLGKKLDEVK EKKKKGKSCL
201: AQLRVLYVVG IDCVDTRVPK YELITQLQEM GEELKPLKRK YSEMEAQMDK LKAELSAAKY PVSLYDDNV

Best Arabidopsis Sequence Match ( AT2G05410.2 )
(BLAST)

001: METTVDTTIT WVIKNFSSLQ SAPIYSDIFV VGGCKWRIMA YPKGINKAHD SFSLFLNVPD NESLPTGWRR HAKVSFSLVN QGSEKLSQRK VTQHWFVQKA
101: FTWGFPVMIT HTELNAKMGF LVNGELKVVA KIEVLEVVGK LDVSKESSPI MKTIDVNGFQ VLPSQVDSVK RLFEKNLDIV SKFRLKNPYL KTACMNLLLS
201: LTETLCQSPQ ELSNDGLSDA GVALAYLIET GLKLDWLEKK LDELKEKKKK EESCLVRLRE MDEQLQPFKK RCLDIEDQIS KEKEELLAAR EPLSLYDDID
301: NNV

Arabidopsis Description

MATH domain and coiled-coil domain-containing protein At2g05410 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.