Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014088.1-P | Field mustard | cytosol | 92.72 | 89.96 |
| CDX67728 | Canola | cytosol | 8.43 | 52.38 |
| CDY17817 | Canola | cytosol | 34.48 | 50.56 |
| CDX67730 | Canola | cytosol | 57.09 | 50.17 |
| AT2G05400.3 | Thale cress | cytosol | 39.85 | 47.93 |
| AT2G05410.2 | Thale cress | cytosol | 55.56 | 47.85 |
| AT2G05420.1 | Thale cress | cytosol | 54.02 | 47.47 |
| CDX67732 | Canola | cytosol | 48.66 | 44.25 |
| CDY52912 | Canola | cytosol | 50.19 | 43.96 |
| CDX98280 | Canola | cytosol | 48.28 | 43.9 |
| CDY09631 | Canola | cytosol | 16.86 | 41.9 |
| CDX67729 | Canola | cytosol | 42.53 | 41.42 |
| CDY53703 | Canola | cytosol | 42.91 | 41.18 |
| CDY23317 | Canola | cytosol | 42.15 | 40.44 |
| CDY06045 | Canola | cytosol | 46.74 | 39.87 |
| CDY23318 | Canola | cytosol | 39.85 | 39.25 |
| CDX88985 | Canola | extracellular | 28.35 | 38.54 |
| CDX88982 | Canola | cytosol | 17.24 | 38.46 |
| CDX69523 | Canola | cytosol | 40.23 | 37.23 |
| CDY00564 | Canola | cytosol | 27.2 | 36.79 |
| CDX88983 | Canola | cytosol | 38.7 | 36.46 |
| CDX88978 | Canola | cytosol | 37.93 | 36.13 |
| CDX71960 | Canola | cytosol | 19.92 | 36.11 |
| CDX90477 | Canola | cytosol | 37.55 | 36.03 |
| CDY00554 | Canola | cytosol | 37.93 | 36.0 |
| CDY06047 | Canola | cytosol | 44.83 | 35.89 |
| CDX88981 | Canola | extracellular | 29.5 | 35.48 |
| CDX67741 | Canola | cytosol | 24.52 | 35.36 |
| CDX84400 | Canola | nucleus | 16.48 | 35.25 |
| CDX71958 | Canola | cytosol | 40.61 | 35.22 |
| CDX98291 | Canola | cytosol | 38.7 | 35.07 |
| CDY06044 | Canola | cytosol | 32.95 | 34.96 |
| CDY00566 | Canola | cytosol | 38.7 | 34.83 |
| CDX98282 | Canola | cytosol | 34.1 | 34.5 |
| CDY06042 | Canola | cytosol | 40.61 | 34.42 |
| CDX88984 | Canola | cytosol | 41.0 | 34.41 |
| CDX98278 | Canola | cytosol | 28.35 | 33.79 |
| CDX98283 | Canola | mitochondrion | 51.34 | 33.67 |
| CDX98279 | Canola | cytosol | 34.1 | 32.96 |
| CDX98281 | Canola | cytosol | 31.03 | 32.79 |
| CDY00562 | Canola | cytosol | 29.89 | 32.77 |
| CDY00561 | Canola | cytosol | 18.39 | 32.0 |
| CDY00567 | Canola | plastid | 23.37 | 30.65 |
| CDX67733 | Canola | cytosol | 38.31 | 30.58 |
| CDX67742 | Canola | cytosol | 34.1 | 28.53 |
| CDY00560 | Canola | cytosol | 11.11 | 27.1 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 36.02 | 22.33 |
| CDY00558 | Canola | cytosol | 49.81 | 21.67 |
| CDX88980 | Canola | cytosol | 49.43 | 21.5 |
| CDX98294 | Canola | plastid | 30.65 | 21.05 |
| CDX67743 | Canola | nucleus | 33.33 | 20.81 |
| CDX67734 | Canola | cytosol | 35.63 | 20.35 |
| CDY06046 | Canola | cytosol | 43.68 | 19.76 |
| CDX98284 | Canola | cytosol | 43.68 | 19.45 |
| CDY00559 | Canola | nucleus | 13.79 | 18.37 |
| CDX71959 | Canola | cytosol | 33.33 | 14.29 |
Protein Annotations
| EnsemblPlants:CDY17006 | EnsemblPlantsGene:GSBRNA2T00094956001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR24007 |
| PANTHER:PTHR24007:SF12 | PFAM:PF00917 | PFscan:PS50144 | ProteinID:CDY17006 | ProteinID:CDY17006.1 | SEG:seg |
| SMART:SM00061 | SUPFAM:SSF49599 | UniParc:UPI0004EF2A6A | UniProt:A0A078FVN0 | MapMan:35.1 | : |
Description
BnaA08g03700DBnaA08g03700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FVN0]
Coordinates
chrLK032069:+:109483..110947
Molecular Weight (calculated)
29762.9 Da
IEP (calculated)
7.165
GRAVY (calculated)
-0.330
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKQSDKKIT WVIKTFSSLH SEKVHSDIFV VGRCRWCLKA YPKGNKKANH LSLYLAVANS EYLPFGWRRH AKFSFTVVNQ FSYKLSRLGG DCFLVMHIIS
101: REGFSGMISL SELHDKEGFL VNGEVKIVLK VDVLEVQGKV DVSEESLPVM ETIDVNGFHV LPSQALCQSP WEISKDDLPE EYAALSYLAA EGFQLDWLGK
201: KLDEVKEKKK KGKSCLAQLQ EMEEELKPLK RKYSEMEAQM DKLKAELSAA KYPVSLYDDN V
101: REGFSGMISL SELHDKEGFL VNGEVKIVLK VDVLEVQGKV DVSEESLPVM ETIDVNGFHV LPSQALCQSP WEISKDDLPE EYAALSYLAA EGFQLDWLGK
201: KLDEVKEKKK KGKSCLAQLQ EMEEELKPLK RKYSEMEAQM DKLKAELSAA KYPVSLYDDN V
001: METTVDTTIT WVIKNFSSLQ SAPIYSDIFV VGGCKWRIMA YPKGINKAHD SFSLFLNVPD NESLPTGWRR HAKVSFSLVN QGSEKLSQRK VTQHWFVQKA
101: FTWGFPVMIT HTELNAKMGF LVNGELKVVA KIEVLEVVGK LDVSKESSPI MKTIDVNGFQ VLPSQVDSVK RLFEKNLDIV SKFRLKNPYL KTACMNLLLS
201: LTETLCQSPQ ELSNDGLSDA GVALAYLIET GLKLDWLEKK LDELKEKKKK EESCLVRLRE MDEQLQPFKK RCLDIEDQIS KEKEELLAAR EPLSLYDDID
301: NNV
101: FTWGFPVMIT HTELNAKMGF LVNGELKVVA KIEVLEVVGK LDVSKESSPI MKTIDVNGFQ VLPSQVDSVK RLFEKNLDIV SKFRLKNPYL KTACMNLLLS
201: LTETLCQSPQ ELSNDGLSDA GVALAYLIET GLKLDWLEKK LDELKEKKKK EESCLVRLRE MDEQLQPFKK RCLDIEDQIS KEKEELLAAR EPLSLYDDID
301: NNV
Arabidopsis Description
MATH domain and coiled-coil domain-containing protein At2g05410 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHT3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.