Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G05400.3 | Thale cress | cytosol | 47.47 | 64.98 |
| AT2G05410.2 | Thale cress | cytosol | 61.62 | 60.4 |
| CDY17006 | Canola | cytosol | 47.47 | 54.02 |
| AT3G58350.1 | Thale cress | cytosol | 53.87 | 53.16 |
| Bra014088.1-P | Field mustard | cytosol | 45.79 | 50.56 |
| AT1G31390.1 | Thale cress | cytosol | 44.78 | 49.63 |
| AT3G58360.1 | Thale cress | cytosol | 48.82 | 48.66 |
| AT3G58370.1 | Thale cress | cytosol | 47.47 | 46.69 |
| AT3G58210.1 | Thale cress | plastid | 51.85 | 46.67 |
| AT1G31380.1 | Thale cress | cytosol | 26.94 | 45.71 |
| AT1G31400.1 | Thale cress | cytosol | 42.76 | 45.68 |
| AT2G01790.1 | Thale cress | cytosol | 41.08 | 45.35 |
| AT1G31370.1 | Thale cress | cytosol | 29.29 | 45.08 |
| AT3G44790.1 | Thale cress | cytosol | 48.82 | 44.75 |
| AT3G58400.1 | Thale cress | extracellular | 44.11 | 44.71 |
| AT3G58260.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 48.15 | 44.55 |
| AT3G58200.1 | Thale cress | cytosol | 47.14 | 43.89 |
| AT3G58340.1 | Thale cress | cytosol | 47.47 | 43.38 |
| AT3G27040.1 | Thale cress | cytosol | 39.39 | 43.17 |
| AT3G58250.1 | Thale cress | cytosol | 45.79 | 42.9 |
| AT3G58270.3 | Thale cress | cytosol | 49.16 | 42.57 |
| AT3G58410.1 | Thale cress | cytosol | 45.79 | 41.46 |
| AT3G44800.1 | Thale cress | cytosol | 47.47 | 41.23 |
| AT3G29580.1 | Thale cress | cytosol | 40.4 | 39.22 |
| AT3G58320.1 | Thale cress | nucleus | 29.29 | 38.84 |
| AT3G58380.1 | Thale cress | cytosol | 38.38 | 37.13 |
| AT3G58240.1 | Thale cress | cytosol | 37.71 | 35.33 |
| AT3G44805.1 | Thale cress | cytosol | 26.94 | 32.26 |
| CDY17817 | Canola | cytosol | 19.19 | 32.02 |
| AT3G58220.2 | Thale cress | cytosol | 43.77 | 28.7 |
| AT3G58430.1 | Thale cress | cytosol | 41.75 | 26.33 |
| AT3G58440.1 | Thale cress | cytosol | 40.07 | 19.8 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.1 | EntrezGene:815090 | ProteinID:AAD32895.1 | ProteinID:AEC05928.1 | ArrayExpress:AT2G05420 |
| EnsemblPlantsGene:AT2G05420 | RefSeq:AT2G05420 | TAIR:AT2G05420 | RefSeq:AT2G05420-TAIR-G | EnsemblPlants:AT2G05420.1 | TAIR:AT2G05420.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 |
| InterPro:MATH/TRAF_dom | RefSeq:NP_178610.1 | PFAM:PF00917 | PFscan:PS50144 | PANTHER:PTHR22743 | PANTHER:PTHR22743:SF159 |
| UniProt:Q9SHT2 | SMART:SM00061 | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI00000A0227 | SEG:seg |
Description
MATH domain and coiled-coil domain-containing protein At2g05420 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHT2]
Coordinates
chr2:+:1983901..1985449
Molecular Weight (calculated)
33644.5 Da
IEP (calculated)
9.916
GRAVY (calculated)
-0.411
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKQVDSKTI TWVIENFSSL QSASIHSDQF VVGDCKWRLK AYPKGNEKAT YLAYRANNLA LYLNVANSKS FPIGWTRHTK FSLTLVNQKS EKLSKLTESQ
101: HWFDHKSTSR GFPAMIPLTN LHTNEGFLVN GELTLVAKVE VLEVVGKLDV SKKSSPVMET IDVNGFQVLP QIESVNRLFA KHLDIASKFR PKKPYMKTAY
201: MNVLLSLTKT LCQSPQDLSN DDISGAGAAL TYLREAGFKL DWLEKKHGEI KEKKKKEEAS LKRLQEMEKQ IFNEAQIYKE KVLAARAPLS LNEDNVF
101: HWFDHKSTSR GFPAMIPLTN LHTNEGFLVN GELTLVAKVE VLEVVGKLDV SKKSSPVMET IDVNGFQVLP QIESVNRLFA KHLDIASKFR PKKPYMKTAY
201: MNVLLSLTKT LCQSPQDLSN DDISGAGAAL TYLREAGFKL DWLEKKHGEI KEKKKKEEAS LKRLQEMEKQ IFNEAQIYKE KVLAARAPLS LNEDNVF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.