Factsheet for AT3G58440.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67741	Canola	cytosol	18.64	61.88
CDX98291	Canola	cytosol	28.29	59.03
AT3G58410.1	Thale cress	cytosol	26.12	47.87
AT3G58340.1	Thale cress	cytosol	24.29	44.92
AT3G58210.1	Thale cress	plastid	24.29	44.24
AT2G05400.3	Thale cress	cytosol	15.81	43.78
AT3G58270.3	Thale cress	cytosol	24.46	42.86
AT3G58360.1	Thale cress	cytosol	21.13	42.62
AT3G58250.1	Thale cress	cytosol	21.96	41.64
AT2G05410.2	Thale cress	cytosol	20.8	41.25
AT3G44790.1	Thale cress	cytosol	22.13	41.05
AT3G44800.1	Thale cress	cytosol	23.29	40.94
AT3G58200.1	Thale cress	cytosol	21.3	40.13
AT2G05420.1	Thale cress	cytosol	19.8	40.07
AT3G58350.1	Thale cress	cytosol	19.97	39.87
AT3G58370.1	Thale cress	cytosol	19.97	39.74
AT3G58400.1	Thale cress	extracellular	18.97	38.91
AT1G31390.1	Thale cress	cytosol	16.97	38.06
AT3G27040.1	Thale cress	cytosol	17.14	38.01
AT3G58260.1	Thale cress	cytosol, golgi, mitochondrion, plastid	20.3	38.01
AT1G31380.1	Thale cress	cytosol	10.98	37.71
AT2G01790.1	Thale cress	cytosol	16.81	37.55
AT3G58320.1	Thale cress	nucleus	13.64	36.61
AT3G58380.1	Thale cress	cytosol	18.64	36.48
AT3G29580.1	Thale cress	cytosol	17.97	35.29
AT1G31370.1	Thale cress	cytosol	10.82	33.68
AT1G31400.1	Thale cress	cytosol	15.31	33.09
AT3G44805.1	Thale cress	cytosol	13.64	33.06
AT3G58430.1	Thale cress	cytosol	24.79	31.63
AT3G58240.1	Thale cress	cytosol	16.14	30.6
AT3G58220.2	Thale cress	cytosol	22.8	30.24

Protein Annotations

Gene3D:2.60.210.10	MapMan:35.1	ArrayExpress:AT3G58440	EnsemblPlantsGene:AT3G58440	RefSeq:AT3G58440	TAIR:AT3G58440
RefSeq:AT3G58440-TAIR-G	EnsemblPlants:AT3G58440.1	TAIR:AT3G58440.1	Unigene:At.53994	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	PFAM:PF00917
PFscan:PS50144	PFscan:PS51257	PANTHER:PTHR22743	PANTHER:PTHR22743:SF159	SMART:SM00061	SUPFAM:SSF49599
InterPro:TRAF-like	UniParc:UPI00000A97F9	SEG:seg	:	:	:

Description

TRAF-like superfamily protein [Source:TAIR;Acc:AT3G58440]

Coordinates

chr3:-:21618446..21621249

Molecular Weight (calculated)

67405.8 Da

IEP (calculated)

4.207

GRAVY (calculated)

-0.427

Length

601 amino acids

Sequence
(BLAST)

001: MSLDLKMQDK FTWVLEKFSS LKDQCYSPVF TVAGCNWRLL SFLKGAKNDR YFSVYLDLEP GSLPPGWRRE VKFSITLDNV CPNTDRVLGG PCFFDAKSNI
101: WGFQDFLLLE KLVNIAEGFL VNDRLTIVAE VDVLPSIVVP LEPVKIISSQ EKLDDDDDDC DDASEESSDD GDASQEYTDD NDDEVCDISR LNLVNAIENA
201: FYTSIRSCNS LVAETEVSND ENDDAPKKDV DDEASSLVLN DSARNGSSIE QVKKTRLHLV LEDASRGRDP NTVACVTETC DYVLMEIQSD KETVDINGFV
301: VVSSKAESVR RILERHPDIS VEFRGKNQQL RNACMNFLLS LIETMCQSLE ELSNEDLVEA DVALTYLRDA GFKVDWLEKK LDQLKEKKEE EMSGLARLHE
401: IEENLVILKQ KWSDLGALAE KEKADFVASK TEVSNNENDY ANKEDVDDEA SSLVWTDSAR DTKTGGKAFN NVASVAETSN NVLTEIPPAK ETTDVNGFEV
501: FMSQTKLDEV SRKKKMEQGS GPRLQTMEER LQKLKLLFVD LESQLQKEKV EALVARAPLS FNDGVCRFSG FCGFVGESLF SYAWKQGPSL YSLSFMSNGT
601: E

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.