Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88982 | Canola | cytosol | 50.28 | 77.78 |
| CDY00561 | Canola | cytosol | 54.7 | 66.0 |
| CDX88985 | Canola | extracellular | 60.77 | 57.29 |
| CDX67728 | Canola | cytosol | 13.26 | 57.14 |
| CDY00567 | Canola | plastid | 56.91 | 51.76 |
| CDX71960 | Canola | cytosol | 40.33 | 50.69 |
| CDX98291 | Canola | cytosol | 77.9 | 48.96 |
| CDX88981 | Canola | extracellular | 54.7 | 45.62 |
| CDY09631 | Canola | cytosol | 24.86 | 42.86 |
| CDY00566 | Canola | cytosol | 59.67 | 37.24 |
| CDY00564 | Canola | cytosol | 37.57 | 35.23 |
| CDX88983 | Canola | cytosol | 53.59 | 35.02 |
| CDY00562 | Canola | cytosol | 45.86 | 34.87 |
| CDX88984 | Canola | cytosol | 59.67 | 34.73 |
| CDX69523 | Canola | cytosol | 52.49 | 33.69 |
| CDX71958 | Canola | cytosol | 55.8 | 33.55 |
| CDY06042 | Canola | cytosol | 53.59 | 31.49 |
| CDX67729 | Canola | cytosol | 45.86 | 30.97 |
| CDY17817 | Canola | cytosol | 30.39 | 30.9 |
| CDY06044 | Canola | cytosol | 41.44 | 30.49 |
| CDX84400 | Canola | nucleus | 20.44 | 30.33 |
| CDY52912 | Canola | cytosol | 47.51 | 28.86 |
| CDX67732 | Canola | cytosol | 45.3 | 28.57 |
| CDX98280 | Canola | cytosol | 45.3 | 28.57 |
| CDX67730 | Canola | cytosol | 46.41 | 28.28 |
| CDX98282 | Canola | cytosol | 39.23 | 27.52 |
| CDX90477 | Canola | cytosol | 40.88 | 27.21 |
| CDY23318 | Canola | cytosol | 39.78 | 27.17 |
| CDY06045 | Canola | cytosol | 43.65 | 25.82 |
| CDX88978 | Canola | cytosol | 38.12 | 25.18 |
| CDY17006 | Canola | cytosol | 35.36 | 24.52 |
| CDY53703 | Canola | cytosol | 36.46 | 24.26 |
| CDY06047 | Canola | cytosol | 43.65 | 24.23 |
| CDY00554 | Canola | cytosol | 36.46 | 24.0 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 55.25 | 23.75 |
| CDX98278 | Canola | cytosol | 28.73 | 23.74 |
| CDX98279 | Canola | cytosol | 35.36 | 23.7 |
| CDY23317 | Canola | cytosol | 35.36 | 23.53 |
| CDY00559 | Canola | nucleus | 24.86 | 22.96 |
| CDY00560 | Canola | cytosol | 13.26 | 22.43 |
| CDX67742 | Canola | cytosol | 38.12 | 22.12 |
| CDX98281 | Canola | cytosol | 29.28 | 21.46 |
| AT3G58440.1 | Thale cress | cytosol | 61.88 | 18.64 |
| CDX98283 | Canola | mitochondrion | 40.33 | 18.34 |
| CDX67733 | Canola | cytosol | 32.6 | 18.04 |
| CDX67734 | Canola | cytosol | 44.2 | 17.51 |
| CDX98294 | Canola | plastid | 32.04 | 15.26 |
| CDX67743 | Canola | nucleus | 33.7 | 14.59 |
| CDY06046 | Canola | cytosol | 46.41 | 14.56 |
| CDX88980 | Canola | cytosol | 48.07 | 14.5 |
| CDX98284 | Canola | cytosol | 46.41 | 14.33 |
| CDY00558 | Canola | cytosol | 46.96 | 14.17 |
| CDX71959 | Canola | cytosol | 42.54 | 12.64 |
Protein Annotations
| EnsemblPlants:CDX67741 | EnsemblPlantsGene:GSBRNA2T00098929001 | ncoils:Coil | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 | ProteinID:CDX67741 |
| ProteinID:CDX67741.1 | SEG:seg | UniParc:UPI0004EE624C | MapMan:35.1 | : | : |
Description
BnaA07g17810D
Coordinates
chrLK031787:-:2055780..2058089
Molecular Weight (calculated)
20633.8 Da
IEP (calculated)
4.776
GRAVY (calculated)
-0.313
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MGPVQMCSQH MHRAGPGFND KSFFCKVIEL MSKETIDVNG FEVLSCQVES VKLIFERHPD IAVEFNAKNQ HLRNACLSFL LSLVETLCQS LEKLSSEDLV
101: EADIALTYLK DAGFKVDWME KKLDQLKDKK EKEKSCLARL QEIEENLQKL KQKCSELDVL AEEEKADLST TRTALSFDDI V
101: EADIALTYLK DAGFKVDWME KKLDQLKDKK EKEKSCLARL QEIEENLQKL KQKCSELDVL AEEEKADLST TRTALSFDDI V
001: MNLLFFLQVL QFDQEESFTT SMTKQVGKKF AWVIKNFSSL QCKKFYSVPF QIGDCKWRLS IYPKGNNCDY LSLFLEVADF KSLPSGWRRY VKLRLYIVKQ
101: EMWGWGFLYM LPLTKLHDEK EGFLVNGELM IVAEVDALGF IDPLNESEES EDPTQPLKKI KLNDDGAVSS DLLEEASPRK ESMEVNGFQV LPSQVESVRL
201: IFERHPDIAS EFRAKNQYLR KACMDFLLSL VETLCQSLQE FSNEDLVEAD IALTYLKDAG FKVDWLEKKL DQVRDKKEKE RSCLAKLQET EETLLKLKQK
301: CTELDALMDT EKAELSAIRT PLSFEDVV
101: EMWGWGFLYM LPLTKLHDEK EGFLVNGELM IVAEVDALGF IDPLNESEES EDPTQPLKKI KLNDDGAVSS DLLEEASPRK ESMEVNGFQV LPSQVESVRL
201: IFERHPDIAS EFRAKNQYLR KACMDFLLSL VETLCQSLQE FSNEDLVEAD IALTYLKDAG FKVDWLEKKL DQVRDKKEKE RSCLAKLQET EETLLKLKQK
301: CTELDALMDT EKAELSAIRT PLSFEDVV
Arabidopsis Description
TRAF-like family protein [Source:TAIR;Acc:AT3G58410]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.