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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • cytosol 3
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX67734 Canola cytosol 55.8 71.55
CDX88982 Canola cytosol 11.43 57.27
CDX67728 Canola cytosol 3.92 54.76
AT3G58320.1 Thale cress nucleus 19.62 51.34
CDX67729 Canola cytosol 22.53 49.25
CDX88985 Canola extracellular 15.87 48.44
CDX71960 Canola cytosol 11.77 47.92
CDY00561 Canola cytosol 11.95 46.67
CDX67741 Canola cytosol 14.33 46.41
CDX98291 Canola cytosol 22.7 46.18
CDX67732 Canola cytosol 22.35 45.64
CDX98280 Canola cytosol 22.18 45.3
CDX67730 Canola cytosol 22.87 45.12
CDY17006 Canola cytosol 19.45 43.68
CDY00554 Canola cytosol 20.31 43.27
CDX88978 Canola cytosol 20.14 43.07
CDY52912 Canola cytosol 21.67 42.62
CDX98282 Canola cytosol 18.6 42.25
CDY09631 Canola cytosol 7.51 41.9
CDY06044 Canola cytosol 17.58 41.87
CDY53703 Canola cytosol 19.28 41.54
CDY23318 Canola cytosol 18.77 41.51
CDY06045 Canola cytosol 21.67 41.5
CDX71958 Canola cytosol 20.99 40.86
CDY06042 Canola cytosol 21.33 40.58
CDY00567 Canola plastid 13.65 40.2
CDY23317 Canola cytosol 18.6 40.07
CDY00562 Canola cytosol 16.21 39.92
CDX98278 Canola cytosol 14.68 39.27
CDY00566 Canola cytosol 19.28 38.97
CDX98294 Canola plastid 25.26 38.95
CDX67743 Canola nucleus 27.65 38.76
CDY06047 Canola cytosol 21.5 38.65
CDX88983 Canola cytosol 18.26 38.63
CDX90477 Canola cytosol 17.92 38.6
CDX88984 Canola cytosol 20.48 38.59
CDX69523 Canola cytosol 18.43 38.3
CDX67742 Canola cytosol 20.14 37.82
CDX88981 Canola extracellular 13.82 37.33
CDX98281 Canola cytosol 15.7 37.25
CDX67733 Canola cytosol 19.11 34.25
CDX98279 Canola cytosol 15.7 34.07
CDY17817 Canola cytosol 10.24 33.71
CDX84400 Canola nucleus 6.48 31.15
CDX98283 Canola mitochondrion 20.82 30.65
CDY00564 Canola cytosol 9.73 29.53
CDY00560 Canola cytosol 5.12 28.04
CDY06043 Canola cytosol, golgi, mitochondrion, peroxisome 18.26 25.42
CDX88980 Canola cytosol 25.6 25.0
CDY00558 Canola cytosol 25.43 24.83
CDY06046 Canola cytosol 23.38 23.74
CDX71959 Canola cytosol 18.6 17.9
CDY00559 Canola nucleus 5.29 15.82
Protein Annotations
EnsemblPlants:CDX98284EnsemblPlantsGene:GSBRNA2T00105816001Gene3D:2.60.210.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002083InterPro:IPR008974InterPro:MATH/TRAF_domInterPro:TRAF-likencoils:CoilPANTHER:PTHR24007
PANTHER:PTHR24007:SF12PFAM:PF00917PFscan:PS50144ProteinID:CDX98284ProteinID:CDX98284.1SEG:seg
SMART:SM00061SUPFAM:SSF49599UniParc:UPI0004EE140DMapMan:35.1::
Description
BnaC06g16450D
Coordinates
chrLK031904:-:343290..345701
Molecular Weight (calculated)
65759.2 Da
IEP (calculated)
4.355
GRAVY (calculated)
-0.451
Length
586 amino acids
Sequence
(BLAST)
001: MFLLYIYEML QKQSTVLMES LQLMAFQQCF LFSNLKRMMK TLQRRRNVGS EQERKFIGTS LSPLETLFTN FLCLRALTSQ FDSLSSSISM GEQVDKRFTW
101: VLKNFSDLQD EPSFSRPFVF AGCNWHIIAY PKGYEKCRHL SLYLGIVNPE SLPSGWRRVL KFRLTLVNKV WRSETKVLEG QRWFDASSSV WGFKEFIPLS
201: TVRYRDNKFL VGDKIVIVAE LHLFPVVVET VKIIQPLSCN EGSQVAAGKS QNAASSQEKV VDFDVSQGIP CVDASQEGLD DDGASEENVD DDDDGASQEG
301: SDDDGPLEEG SDDDDDDASS LVSEDGSSEK GSLKDGSLTV RNCGMKCNNV ASETEVSNVD YDNAPIEDPG DDDVIENDQG DDNTSSLVSG VSDRDVGSLN
401: KFEVASQREE DGDMKCNKVA SVTEASNDFP EEVQPVKETK HVNGFQVLSS QVESVSHIFK RHPDIALGFR PKNQEIRRAY MNELFNLIEM LCQPPEKLSV
501: DDLSNADDTL ADLIDVGFKL DWLKIKLDEV SEKKKKEKGS EARLRTMEEE LQKLKLMFVN LEIQLQKEKA EALAARAPLS FDDVVC
Best Arabidopsis Sequence Match ( AT3G58440.1 )
(BLAST)
001: MSLDLKMQDK FTWVLEKFSS LKDQCYSPVF TVAGCNWRLL SFLKGAKNDR YFSVYLDLEP GSLPPGWRRE VKFSITLDNV CPNTDRVLGG PCFFDAKSNI
101: WGFQDFLLLE KLVNIAEGFL VNDRLTIVAE VDVLPSIVVP LEPVKIISSQ EKLDDDDDDC DDASEESSDD GDASQEYTDD NDDEVCDISR LNLVNAIENA
201: FYTSIRSCNS LVAETEVSND ENDDAPKKDV DDEASSLVLN DSARNGSSIE QVKKTRLHLV LEDASRGRDP NTVACVTETC DYVLMEIQSD KETVDINGFV
301: VVSSKAESVR RILERHPDIS VEFRGKNQQL RNACMNFLLS LIETMCQSLE ELSNEDLVEA DVALTYLRDA GFKVDWLEKK LDQLKEKKEE EMSGLARLHE
401: IEENLVILKQ KWSDLGALAE KEKADFVASK TEVSNNENDY ANKEDVDDEA SSLVWTDSAR DTKTGGKAFN NVASVAETSN NVLTEIPPAK ETTDVNGFEV
501: FMSQTKLDEV SRKKKMEQGS GPRLQTMEER LQKLKLLFVD LESQLQKEKV EALVARAPLS FNDGVCRFSG FCGFVGESLF SYAWKQGPSL YSLSFMSNGT
601: E
Arabidopsis Description
TRAF-like superfamily protein [Source:TAIR;Acc:AT3G58440]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.