Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003331.1-P | Field mustard | cytosol | 97.86 | 98.16 |
| CDX98280 | Canola | cytosol | 49.85 | 56.79 |
| CDX67732 | Canola | cytosol | 48.62 | 55.4 |
| CDX98281 | Canola | cytosol | 40.06 | 53.04 |
| CDX98282 | Canola | cytosol | 38.53 | 48.84 |
| CDX88982 | Canola | cytosol | 16.21 | 45.3 |
| CDY06044 | Canola | cytosol | 33.64 | 44.72 |
| CDX67730 | Canola | cytosol | 39.45 | 43.43 |
| CDY23318 | Canola | cytosol | 35.17 | 43.4 |
| CDY53703 | Canola | cytosol | 35.47 | 42.65 |
| CDX67729 | Canola | cytosol | 34.56 | 42.16 |
| CDY23317 | Canola | cytosol | 34.86 | 41.91 |
| CDY00562 | Canola | cytosol | 29.36 | 40.34 |
| CDX69523 | Canola | cytosol | 34.56 | 40.07 |
| CDY06045 | Canola | cytosol | 37.0 | 39.54 |
| CDX98278 | Canola | cytosol | 26.3 | 39.27 |
| CDX90477 | Canola | cytosol | 32.11 | 38.6 |
| CDY00554 | Canola | cytosol | 32.42 | 38.55 |
| CDX98279 | Canola | cytosol | 31.8 | 38.52 |
| CDY17006 | Canola | cytosol | 30.58 | 38.31 |
| CDY52912 | Canola | cytosol | 33.95 | 37.25 |
| CDX88978 | Canola | cytosol | 31.19 | 37.23 |
| CDY06047 | Canola | cytosol | 36.39 | 36.5 |
| CDX88983 | Canola | cytosol | 30.89 | 36.46 |
| CDX67742 | Canola | cytosol | 33.95 | 35.58 |
| CDY00561 | Canola | cytosol | 16.21 | 35.33 |
| CDY06042 | Canola | cytosol | 33.03 | 35.06 |
| CDX98291 | Canola | cytosol | 30.28 | 34.38 |
| CDX88985 | Canola | extracellular | 20.18 | 34.38 |
| CDX71960 | Canola | cytosol | 14.68 | 33.33 |
| CDX88984 | Canola | cytosol | 31.5 | 33.12 |
| CDX67741 | Canola | cytosol | 18.04 | 32.6 |
| CDY00566 | Canola | cytosol | 28.75 | 32.41 |
| CDY00560 | Canola | cytosol | 10.4 | 31.78 |
| CDX88981 | Canola | extracellular | 20.49 | 30.88 |
| CDX71958 | Canola | cytosol | 28.13 | 30.56 |
| CDY00567 | Canola | plastid | 17.43 | 28.64 |
| CDX98283 | Canola | mitochondrion | 33.64 | 27.64 |
| CDY09631 | Canola | cytosol | 7.95 | 24.76 |
| CDY00564 | Canola | cytosol | 14.37 | 24.35 |
| CDY17817 | Canola | cytosol | 13.15 | 24.16 |
| CDX67743 | Canola | nucleus | 29.97 | 23.45 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 29.66 | 23.04 |
| CDX67734 | Canola | cytosol | 27.83 | 19.91 |
| CDY06046 | Canola | cytosol | 34.25 | 19.41 |
| CDX88980 | Canola | cytosol | 35.47 | 19.33 |
| CDX98294 | Canola | plastid | 22.32 | 19.21 |
| CDX98284 | Canola | cytosol | 34.25 | 19.11 |
| CDY00558 | Canola | cytosol | 34.86 | 19.0 |
| CDX84400 | Canola | nucleus | 7.03 | 18.85 |
| CDX71959 | Canola | cytosol | 33.95 | 18.23 |
| CDY00559 | Canola | nucleus | 3.06 | 5.1 |
| CDX67728 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX67733 | EnsemblPlantsGene:GSBRNA2T00098920001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 |
| PFAM:PF00917 | PFscan:PS50144 | ProteinID:CDX67733 | ProteinID:CDX67733.1 | SMART:SM00061 | SUPFAM:SSF49599 |
| UniParc:UPI0004EEA9F9 | MapMan:35.1 | : | : | : | : |
Description
BnaA07g17730D
Coordinates
chrLK031787:-:2016834..2020935
Molecular Weight (calculated)
37591.7 Da
IEP (calculated)
5.681
GRAVY (calculated)
-0.424
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKKVDKKFT WVIKDFSSLQ SEKIFSDKFV VSGCKWYISA YPKGYKVDNF LSLYLEVPDY GSLPSDWRRH ARYRLIVVNQ RSEKLSRQLE VQHWFDVKSS
101: SWGFPSMLSL DEINSKDGGF LVNGELKIAI EIDLLEIIGK VEGNGFHLLS SQVESVSRMF EKHPETASEV HLRNPNIRTE SHRWFDQNKS EWGFPYMIPL
201: AKIHDKNEDF LVNDQLMIVA EVDVLQVVVT SEKPEETNPL NQQVESVSSI QDSVVEFRAR NQHLKTACTN VLLSLTQTLC QTPQELSVDD LVEAGKTLAY
301: MKDSGLEVEW LVKKLNEVKA KKQEQSG
101: SWGFPSMLSL DEINSKDGGF LVNGELKIAI EIDLLEIIGK VEGNGFHLLS SQVESVSRMF EKHPETASEV HLRNPNIRTE SHRWFDQNKS EWGFPYMIPL
201: AKIHDKNEDF LVNDQLMIVA EVDVLQVVVT SEKPEETNPL NQQVESVSSI QDSVVEFRAR NQHLKTACTN VLLSLTQTLC QTPQELSVDD LVEAGKTLAY
301: MKDSGLEVEW LVKKLNEVKA KKQEQSG
001: MGKEVDNKFT WVIKNFSSQQ SRKNYSDEFF VDGCKWRLLA FPKGNGVEKL SLYLAVAGSE FLPDGWRRHA YFHFSVVNQL SDELSQARET KNWFDASTSD
101: WGFTSMLSLK KLHDKDGGFL VNGELKIVVD VSVLEVIGKL DVPVESEETT TKALSELEEN DVPEESEETT KALSKVDEND GAESNDSLKE ASSVKESMDV
201: NGFRVLPSQV ETVSCIFERH PDIASEFGPK NQHLRSAYMN VLLSLIKTMC QSTQELSKDD LSDADAALAY LTDAGLNLNW LEEKLEEVSE KKENEEAGET
301: RVHEIEEELK ELKLKCSNLE AQLEKEKADV SVARAPFSFD DIV
101: WGFTSMLSLK KLHDKDGGFL VNGELKIVVD VSVLEVIGKL DVPVESEETT TKALSELEEN DVPEESEETT KALSKVDEND GAESNDSLKE ASSVKESMDV
201: NGFRVLPSQV ETVSCIFERH PDIASEFGPK NQHLRSAYMN VLLSLIKTMC QSTQELSKDD LSDADAALAY LTDAGLNLNW LEEKLEEVSE KKENEEAGET
301: RVHEIEEELK ELKLKCSNLE AQLEKEKADV SVARAPFSFD DIV
Arabidopsis Description
MATH domain and coiled-coil domain-containing protein At3g58270 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2I9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.