Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67728 | Canola | cytosol | 9.69 | 45.24 |
| CDY09631 | Canola | cytosol | 15.82 | 29.52 |
| CDX88981 | Canola | extracellular | 32.14 | 29.03 |
| CDY00564 | Canola | cytosol | 26.02 | 26.42 |
| CDX67741 | Canola | cytosol | 22.96 | 24.86 |
| CDX88982 | Canola | cytosol | 13.27 | 22.22 |
| CDX84400 | Canola | nucleus | 13.78 | 22.13 |
| CDX88985 | Canola | extracellular | 21.43 | 21.88 |
| CDX71960 | Canola | cytosol | 15.31 | 20.83 |
| CDY00567 | Canola | plastid | 19.9 | 19.6 |
| CDY00561 | Canola | cytosol | 14.8 | 19.33 |
| CDY17817 | Canola | cytosol | 15.82 | 17.42 |
| CDX98291 | Canola | cytosol | 23.47 | 15.97 |
| CDY00566 | Canola | cytosol | 20.92 | 14.14 |
| CDY17006 | Canola | cytosol | 18.37 | 13.79 |
| CDX69523 | Canola | cytosol | 18.88 | 13.12 |
| CDX71958 | Canola | cytosol | 19.9 | 12.96 |
| CDX98282 | Canola | cytosol | 16.84 | 12.79 |
| CDX88978 | Canola | cytosol | 17.35 | 12.41 |
| CDX67732 | Canola | cytosol | 17.35 | 11.85 |
| CDX67730 | Canola | cytosol | 17.86 | 11.78 |
| CDY52912 | Canola | cytosol | 17.86 | 11.74 |
| CDY06042 | Canola | cytosol | 18.37 | 11.69 |
| CDX88984 | Canola | cytosol | 18.37 | 11.58 |
| CDX88983 | Canola | cytosol | 15.82 | 11.19 |
| CDX98280 | Canola | cytosol | 16.33 | 11.15 |
| CDY06047 | Canola | cytosol | 18.37 | 11.04 |
| CDY00554 | Canola | cytosol | 15.31 | 10.91 |
| CDX67729 | Canola | cytosol | 14.8 | 10.82 |
| CDY06045 | Canola | cytosol | 16.84 | 10.78 |
| CDY00562 | Canola | cytosol | 11.73 | 9.66 |
| CDX90477 | Canola | cytosol | 12.24 | 8.82 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 16.84 | 7.84 |
| CDX98283 | Canola | mitochondrion | 15.82 | 7.79 |
| CDX98294 | Canola | plastid | 14.29 | 7.37 |
| CDY53703 | Canola | cytosol | 9.69 | 6.99 |
| CDY23318 | Canola | cytosol | 9.18 | 6.79 |
| CDX67734 | Canola | cytosol | 15.31 | 6.56 |
| CDY23317 | Canola | cytosol | 8.67 | 6.25 |
| CDY06046 | Canola | cytosol | 17.35 | 5.89 |
| CDY06044 | Canola | cytosol | 7.14 | 5.69 |
| CDX98279 | Canola | cytosol | 7.65 | 5.56 |
| CDY00558 | Canola | cytosol | 16.84 | 5.5 |
| CDX88980 | Canola | cytosol | 16.84 | 5.5 |
| CDX67742 | Canola | cytosol | 8.67 | 5.45 |
| CDX98284 | Canola | cytosol | 15.82 | 5.29 |
| CDX98278 | Canola | cytosol | 5.61 | 5.02 |
| CDX98281 | Canola | cytosol | 5.61 | 4.45 |
| CDX67743 | Canola | nucleus | 7.14 | 3.35 |
| CDX67733 | Canola | cytosol | 5.1 | 3.06 |
| CDX71959 | Canola | cytosol | 7.14 | 2.3 |
| CDY00560 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY00559 | EnsemblPlantsGene:GSBRNA2T00110311001 | ncoils:Coil | ProteinID:CDY00559 | ProteinID:CDY00559.1 | SEG:seg |
| UniParc:UPI0004EDCA18 | MapMan:35.2 | : | : | : | : |
Description
BnaC04g23660D
Coordinates
chrLK031920:-:293871..298909
Molecular Weight (calculated)
22037.1 Da
IEP (calculated)
5.542
GRAVY (calculated)
-0.742
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEGGTREKG ENGSLKEDYA SSSGSKAIKW FGELLAMDLI EDSDGRLDHM ERSAVETEKT VKVIYEGWRK LKEANAKLDE RVGAVESRLG SVEFQLQKIT
101: AAIDRIGSNT TSSKPHVQVS IAQSRSAGFK VDWLEKNLEQ VKEKKLKELS GLAMLQETEE KAKKLKRKFE ELDALAEEQK KELLATRTSR SFDDVV
101: AAIDRIGSNT TSSKPHVQVS IAQSRSAGFK VDWLEKNLEQ VKEKKLKELS GLAMLQETEE KAKKLKRKFE ELDALAEEQK KELLATRTSR SFDDVV
001: MNLLFFLQVL QFDQEESFTT SMTKQVGKKF AWVIKNFSSL QCKKFYSVPF QIGDCKWRLS IYPKGNNCDY LSLFLEVADF KSLPSGWRRY VKLRLYIVKQ
101: EMWGWGFLYM LPLTKLHDEK EGFLVNGELM IVAEVDALGF IDPLNESEES EDPTQPLKKI KLNDDGAVSS DLLEEASPRK ESMEVNGFQV LPSQVESVRL
201: IFERHPDIAS EFRAKNQYLR KACMDFLLSL VETLCQSLQE FSNEDLVEAD IALTYLKDAG FKVDWLEKKL DQVRDKKEKE RSCLAKLQET EETLLKLKQK
301: CTELDALMDT EKAELSAIRT PLSFEDVV
101: EMWGWGFLYM LPLTKLHDEK EGFLVNGELM IVAEVDALGF IDPLNESEES EDPTQPLKKI KLNDDGAVSS DLLEEASPRK ESMEVNGFQV LPSQVESVRL
201: IFERHPDIAS EFRAKNQYLR KACMDFLLSL VETLCQSLQE FSNEDLVEAD IALTYLKDAG FKVDWLEKKL DQVRDKKEKE RSCLAKLQET EETLLKLKQK
301: CTELDALMDT EKAELSAIRT PLSFEDVV
Arabidopsis Description
TRAF-like family protein [Source:TAIR;Acc:AT3G58410]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.