Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88978 | Canola | cytosol | 93.09 | 93.43 |
| CDX67728 | Canola | cytosol | 8.0 | 52.38 |
| AT3G58260.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 56.0 | 47.98 |
| CDX98280 | Canola | cytosol | 47.27 | 45.3 |
| CDX67729 | Canola | cytosol | 43.64 | 44.78 |
| CDY52912 | Canola | cytosol | 47.64 | 43.96 |
| CDX67732 | Canola | cytosol | 45.82 | 43.9 |
| CDX88982 | Canola | cytosol | 18.55 | 43.59 |
| CDX67730 | Canola | cytosol | 46.55 | 43.1 |
| CDY23318 | Canola | cytosol | 41.45 | 43.02 |
| CDY23317 | Canola | cytosol | 40.36 | 40.81 |
| CDY53703 | Canola | cytosol | 40.0 | 40.44 |
| CDX71960 | Canola | cytosol | 21.09 | 40.28 |
| CDY06045 | Canola | cytosol | 44.73 | 40.2 |
| CDX98278 | Canola | cytosol | 31.64 | 39.73 |
| CDX69523 | Canola | cytosol | 40.73 | 39.72 |
| CDX88985 | Canola | extracellular | 26.91 | 38.54 |
| CDX98281 | Canola | cytosol | 34.55 | 38.46 |
| CDY06044 | Canola | cytosol | 34.18 | 38.21 |
| CDY09631 | Canola | cytosol | 14.55 | 38.1 |
| CDY17006 | Canola | cytosol | 36.0 | 37.93 |
| CDY00562 | Canola | cytosol | 32.73 | 37.82 |
| CDY06047 | Canola | cytosol | 44.73 | 37.73 |
| CDX98282 | Canola | cytosol | 34.91 | 37.21 |
| CDX90477 | Canola | cytosol | 36.73 | 37.13 |
| CDY00566 | Canola | cytosol | 38.91 | 36.9 |
| CDY06042 | Canola | cytosol | 41.09 | 36.69 |
| CDX67741 | Canola | cytosol | 24.0 | 36.46 |
| CDY00564 | Canola | cytosol | 25.45 | 36.27 |
| CDY00561 | Canola | cytosol | 19.64 | 36.0 |
| CDX88981 | Canola | extracellular | 28.36 | 35.94 |
| CDX98291 | Canola | cytosol | 37.09 | 35.42 |
| CDX88984 | Canola | cytosol | 38.91 | 34.41 |
| CDX88983 | Canola | cytosol | 34.18 | 33.94 |
| CDX71958 | Canola | cytosol | 37.09 | 33.89 |
| CDY00567 | Canola | plastid | 24.36 | 33.67 |
| CDX84400 | Canola | nucleus | 14.91 | 33.61 |
| CDX67733 | Canola | cytosol | 38.55 | 32.42 |
| CDX98283 | Canola | mitochondrion | 46.55 | 32.16 |
| CDX98279 | Canola | cytosol | 30.91 | 31.48 |
| CDY17817 | Canola | cytosol | 20.0 | 30.9 |
| CDX67742 | Canola | cytosol | 34.91 | 30.77 |
| CDY00560 | Canola | cytosol | 11.64 | 29.91 |
| CDX88980 | Canola | cytosol | 50.18 | 23.0 |
| CDY00558 | Canola | cytosol | 49.45 | 22.67 |
| CDX98294 | Canola | plastid | 31.27 | 22.63 |
| CDX67734 | Canola | cytosol | 37.45 | 22.54 |
| CDX67743 | Canola | nucleus | 33.45 | 22.01 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 32.36 | 21.14 |
| CDX98284 | Canola | cytosol | 43.27 | 20.31 |
| CDY06046 | Canola | cytosol | 42.55 | 20.28 |
| CDY00559 | Canola | nucleus | 10.91 | 15.31 |
| CDX71959 | Canola | cytosol | 33.45 | 15.11 |
Protein Annotations
| EnsemblPlants:CDY00554 | EnsemblPlantsGene:GSBRNA2T00110304001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR24007 |
| PANTHER:PTHR24007:SF12 | PFscan:PS50144 | ProteinID:CDY00554 | ProteinID:CDY00554.1 | SEG:seg | SUPFAM:SSF49599 |
| UniParc:UPI0004EC40F7 | MapMan:35.1 | : | : | : | : |
Description
BnaC04g23710D
Coordinates
chrLK031920:-:248931..250090
Molecular Weight (calculated)
31348.3 Da
IEP (calculated)
8.699
GRAVY (calculated)
-0.168
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSQVDSKFT WVIKNLAPFG SEIICSDSFV ISGCKWRLIA YPKRKWLNYL TLEVADCESF PIGWRRLANF SVTIVNKALE QIYRRQVTQQ WFDHKTPRLS
101: FPLMKTTLGF LVDEEVKIVA EIDVVEVIIN GFQVLPSQVK SVNRLFKREP DIASKFPINN PLLKTAYMNV LLSLTKTLHL SPQKISNGDL SDTETTLAHM
201: KTIGFKLELL EKKICEIKEK KAKEKAGKIK IQNTEEKLKD LKQKCLDLEA QLDTEKAEVL AASAPLLLSD DEDVF
101: FPLMKTTLGF LVDEEVKIVA EIDVVEVIIN GFQVLPSQVK SVNRLFKREP DIASKFPINN PLLKTAYMNV LLSLTKTLHL SPQKISNGDL SDTETTLAHM
201: KTIGFKLELL EKKICEIKEK KAKEKAGKIK IQNTEEKLKD LKQKCLDLEA QLDTEKAEVL AASAPLLLSD DEDVF
001: METTVDTTIT WVIKNFSSLQ SAPIYSDIFV VGGCKWRIMA YPKGINKAHD SFSLFLNVPD NESLPTGWRR HAKVSFSLVN QGSEKLSQRK VTQHWFVQKA
101: FTWGFPVMIT HTELNAKMGF LVNGELKVVA KIEVLEVVGK LDVSKESSPI MKTIDVNGFQ VLPSQVDSVK RLFEKNLDIV SKFRLKNPYL KTACMNLLLS
201: LTETLCQSPQ ELSNDGLSDA GVALAYLIET GLKLDWLEKK LDELKEKKKK EESCLVRLRE MDEQLQPFKK RCLDIEDQIS KEKEELLAAR EPLSLYDDID
301: NNV
101: FTWGFPVMIT HTELNAKMGF LVNGELKVVA KIEVLEVVGK LDVSKESSPI MKTIDVNGFQ VLPSQVDSVK RLFEKNLDIV SKFRLKNPYL KTACMNLLLS
201: LTETLCQSPQ ELSNDGLSDA GVALAYLIET GLKLDWLEKK LDELKEKKKK EESCLVRLRE MDEQLQPFKK RCLDIEDQIS KEKEELLAAR EPLSLYDDID
301: NNV
Arabidopsis Description
MATH domain and coiled-coil domain-containing protein At2g05410 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHT3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.