CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88982	Canola	cytosol	31.03	76.92
CDX88984	Canola	cytosol	80.69	75.24
CDX88985	Canola	extracellular	43.1	65.1
CDY00561	Canola	cytosol	33.45	64.67
CDX67741	Canola	cytosol	37.24	59.67
CDY00567	Canola	plastid	39.31	57.29
AT3G58410.1	Thale cress	cytosol	62.07	54.88
CDX71960	Canola	cytosol	26.21	52.78
CDX88981	Canola	extracellular	39.31	52.53
CDX71958	Canola	cytosol	52.76	50.83
CDX98291	Canola	cytosol	48.28	48.61
CDX67728	Canola	cytosol	6.9	47.62
CDY06042	Canola	cytosol	50.34	47.4
CDY06044	Canola	cytosol	39.66	46.75
CDX69523	Canola	cytosol	44.48	45.74
CDY00564	Canola	cytosol	29.66	44.56
CDY00562	Canola	cytosol	36.21	44.12
CDY52912	Canola	cytosol	44.14	42.95
CDX67730	Canola	cytosol	43.79	42.76
CDY06045	Canola	cytosol	44.83	42.48
CDX98281	Canola	cytosol	35.86	42.11
CDX67742	Canola	cytosol	45.17	41.99
CDY09631	Canola	cytosol	15.17	41.9
CDX90477	Canola	cytosol	38.62	41.18
CDX88983	Canola	cytosol	39.31	41.16
CDY00560	Canola	cytosol	15.17	41.12
CDX67732	Canola	cytosol	40.0	40.42
CDX67729	Canola	cytosol	37.24	40.3
CDX98280	Canola	cytosol	39.31	39.72
CDX88978	Canola	cytosol	36.9	39.05
CDY00554	Canola	cytosol	36.9	38.91
CDY17006	Canola	cytosol	34.83	38.7
CDY23318	Canola	cytosol	34.83	38.11
CDX98278	Canola	cytosol	28.62	37.9
CDY53703	Canola	cytosol	35.52	37.87
CDY06047	Canola	cytosol	41.72	37.12
CDX98279	Canola	cytosol	34.14	36.67
CDY23317	Canola	cytosol	34.14	36.4
CDX84400	Canola	nucleus	14.48	34.43
CDX98282	Canola	cytosol	26.9	30.23
CDX98283	Canola	mitochondrion	39.66	28.89
CDX67733	Canola	cytosol	32.41	28.75
CDY17817	Canola	cytosol	16.9	27.53
CDX67734	Canola	cytosol	40.69	25.82
CDY06043	Canola	cytosol, golgi, mitochondrion, peroxisome	36.9	25.42
CDX98294	Canola	plastid	29.31	22.37
CDX67743	Canola	nucleus	31.72	22.01
CDX88980	Canola	cytosol	45.17	21.83
CDY06046	Canola	cytosol	43.1	21.66
CDY00558	Canola	cytosol	44.14	21.33
CDY00559	Canola	nucleus	14.14	20.92
CDX98284	Canola	cytosol	38.97	19.28
CDX71959	Canola	cytosol	38.28	18.23

Protein Annotations

EnsemblPlants:CDY00566	EnsemblPlantsGene:GSBRNA2T00110320001	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	ncoils:Coil	PANTHER:PTHR24007
PANTHER:PTHR24007:SF12	PFscan:PS50144	ProteinID:CDY00566	ProteinID:CDY00566.1	SEG:seg	SUPFAM:SSF49599
UniParc:UPI0004EE3EF5	MapMan:35.1	:	:	:	:

Description

BnaC04g23590D

Coordinates

chrLK031920:-:325763..327368

Molecular Weight (calculated)

33231.6 Da

IEP (calculated)

5.348

GRAVY (calculated)

-0.196

Length

290 amino acids

Sequence
(BLAST)

001: MAMQVGKKFS WVIKDFPSLQ CEICYSAPVL IGDCKWRLCA YPKEDKFWKL IQNCKKHIIG LMRRNSCWGF PSMIPLTKLH DEKEGFLVNG YLVIVAEVDV
101: LEVIATLDES EESEESRRPV KKSKHGGGEE SIDSLKEAHL GKETMDVNGF QVLVSQVESV RRIFEMHPDI AVDFRAKNQH LRKACMSFLL SLIETLCMSL
201: KDLSNEDLVE ADVALTYVRD AGFKVDWLEK KLEILKEKKE KEKCSLILLE EMKEKLLELK QKCSDLDALV EKEEAELLAI RTPSSFVDVL

Best Arabidopsis Sequence Match ( AT3G58410.1 )
(BLAST)

001: MNLLFFLQVL QFDQEESFTT SMTKQVGKKF AWVIKNFSSL QCKKFYSVPF QIGDCKWRLS IYPKGNNCDY LSLFLEVADF KSLPSGWRRY VKLRLYIVKQ
101: EMWGWGFLYM LPLTKLHDEK EGFLVNGELM IVAEVDALGF IDPLNESEES EDPTQPLKKI KLNDDGAVSS DLLEEASPRK ESMEVNGFQV LPSQVESVRL
201: IFERHPDIAS EFRAKNQYLR KACMDFLLSL VETLCQSLQE FSNEDLVEAD IALTYLKDAG FKVDWLEKKL DQVRDKKEKE RSCLAKLQET EETLLKLKQK
301: CTELDALMDT EKAELSAIRT PLSFEDVV

Arabidopsis Description

TRAF-like family protein [Source:TAIR;Acc:AT3G58410]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.