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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY06044 Canola cytosol 34.15 84.55
CDX88982 Canola cytosol 11.49 59.83
CDY00561 Canola cytosol 11.82 48.0
CDY00562 Canola cytosol 17.57 44.96
CDX88983 Canola cytosol 20.36 44.77
AT3G58340.1 Thale cress cytosol 23.48 44.0
CDX98281 Canola cytosol 17.57 43.32
CDX88985 Canola extracellular 13.46 42.71
CDX67741 Canola cytosol 12.64 42.54
CDX98278 Canola cytosol 15.27 42.47
CDY06042 Canola cytosol 21.18 41.88
CDX71958 Canola cytosol 20.53 41.53
CDY06045 Canola cytosol 20.69 41.18
CDY23318 Canola cytosol 17.57 40.38
CDX88981 Canola extracellular 14.29 40.09
CDY53703 Canola cytosol 17.9 40.07
CDX67742 Canola cytosol 20.53 40.06
CDX88984 Canola cytosol 20.2 39.55
CDX90477 Canola cytosol 17.57 39.34
CDY23317 Canola cytosol 17.57 39.34
CDX67730 Canola cytosol 18.88 38.72
CDY00567 Canola plastid 12.64 38.69
CDX67732 Canola cytosol 18.23 38.68
CDX69523 Canola cytosol 17.9 38.65
CDY00560 Canola cytosol 6.73 38.32
CDY00566 Canola cytosol 18.23 38.28
CDX98291 Canola cytosol 18.06 38.19
CDX98280 Canola cytosol 17.73 37.63
CDX67729 Canola cytosol 16.26 36.94
CDY06047 Canola cytosol 19.38 36.2
CDX98279 Canola cytosol 15.6 35.19
CDY52912 Canola cytosol 17.08 34.9
CDX67733 Canola cytosol 18.23 33.95
CDX88978 Canola cytosol 15.27 33.94
CDY00554 Canola cytosol 15.11 33.45
CDY17006 Canola cytosol 14.29 33.33
CDX98282 Canola cytosol 13.96 32.95
CDX71960 Canola cytosol 7.72 32.64
CDY00564 Canola cytosol 9.69 30.57
CDY06046 Canola cytosol 28.74 30.33
CDX98283 Canola mitochondrion 17.57 26.88
CDY09631 Canola cytosol 4.6 26.67
CDY06043 Canola cytosol, golgi, mitochondrion, peroxisome 17.24 24.94
CDX67743 Canola nucleus 15.76 22.97
CDX84400 Canola nucleus 4.11 20.49
CDX67734 Canola cytosol 14.61 19.47
CDY00558 Canola cytosol 18.39 18.67
CDX98284 Canola cytosol 17.9 18.6
CDX98294 Canola plastid 11.49 18.42
CDX88980 Canola cytosol 17.9 18.17
CDY17817 Canola cytosol 4.93 16.85
CDY00559 Canola nucleus 2.3 7.14
CDX67728 Canola cytosol 0.16 2.38
Protein Annotations
EnsemblPlants:CDX71959EnsemblPlantsGene:GSBRNA2T00155721001Gene3D:2.60.210.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002083InterPro:IPR008974InterPro:MATH/TRAF_domInterPro:TRAF-likencoils:CoilPANTHER:PTHR24007
PANTHER:PTHR24007:SF12PFAM:PF00917PFscan:PS50144ProteinID:CDX71959ProteinID:CDX71959.1SMART:SM00061
SUPFAM:SSF49599UniParc:UPI0004EF1B8CMapMan:35.1:::
Description
BnaC08g29150D
Coordinates
chrLK031795:+:1503301..1508702
Molecular Weight (calculated)
69317.3 Da
IEP (calculated)
6.142
GRAVY (calculated)
-0.256
Length
609 amino acids
Sequence
(BLAST)
001: MERNLIKPCV GVLNQLSENL SLIQEGPHWF DSETMEWGSV SFPGFPSLRN KDGGTLVNDE VKILAEVDVL ESIDKLYIPK KLEKTTIPQR TFSNKVNGFQ
101: VNGFQVLPSQ VETVRSIFER HPNIAVGFHS KNQHLRKACM NSLLCLIETM CQSLQELSSE DLVQADVALT YLKDSGFKLD WLEMKLDQVK VNKEKEMTCL
201: AILQETEENL LNLKQKCSEV KAELAETKTP LNSLSLCGFL DPQVTMSREH KRIMLLLQRA ADKLNLAVHN IAESEKYFLD SAAEYGNKAS NLESSGRDVS
301: WYLQMKERCQ EAAKEYTNTR HVALRVVLRH FVFCLLSPRF HNYYCSFVLN STYHITSMEN LNKRKFAWLI KNFSSLPSDK LYSAPVLISG FYWDVFTYPK
401: GYKGGDSLVV SLAVTDGQSL PSGWARYVKF RLTIVNQLSH ELSIHRETGI WFDQKAPGWG LSGMLPFAKL HDKDGGFLVN DELKIVAELE SLEVIGMLDE
501: SKDLLDKTSS SVRESIDANG FQVLPSQVEA VRGMFERHPD IALEFRAKNQ HLRTACMNFL LSLSEMLPKS LEEFSNEDLM EADIALTYLK DVGFKVDWLE
601: KSLDQVKRT
Best Arabidopsis Sequence Match ( AT3G58340.2 )
(BLAST)
001: MAKAVDKKFC WEIKNFSSLN SERCHSVPVV IGDCKWRLVA FPKGYKADYL SLYLEVADFK SLPSGWRRYV KFRACIVNQL SQELSVQQET QRWFDQNAPG
101: WGFENMLLLT ELNAKDGGFL VNGQVMIVAE VEFLEVIGTL DESEKTQEVA QQVKEIIQPN DLINKTQEVA QQVKESIDVN GFQVLPSQVE SVRRIFKKHP
201: DIAVGFQVKN QHLRKTFMNF LVNVIETMCQ SLQELSNEDL VEVDIALTYL KDAGFKVDWL EKKLDHVKEK KEKEQSGLII LQGIEQQLHE LMHKCEKKKS
301: EVLSVGAPLK FDDVV
Arabidopsis Description
MATH domain and coiled-coil domain-containing protein At3g58340 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2I2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.