Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88981 | Canola | extracellular | 86.92 | 42.86 |
| CDX98278 | Canola | cytosol | 40.19 | 19.63 |
| CDY00564 | Canola | cytosol | 33.64 | 18.65 |
| CDY06044 | Canola | cytosol | 37.38 | 16.26 |
| CDX88982 | Canola | cytosol | 17.76 | 16.24 |
| CDY00566 | Canola | cytosol | 41.12 | 15.17 |
| CDX98279 | Canola | cytosol | 34.58 | 13.7 |
| CDY23317 | Canola | cytosol | 34.58 | 13.6 |
| CDY53703 | Canola | cytosol | 34.58 | 13.6 |
| CDY00561 | Canola | cytosol | 18.69 | 13.33 |
| CDX67741 | Canola | cytosol | 22.43 | 13.26 |
| CDX71960 | Canola | cytosol | 17.76 | 13.19 |
| CDX88984 | Canola | cytosol | 38.32 | 13.18 |
| CDX67730 | Canola | cytosol | 36.45 | 13.13 |
| CDY06042 | Canola | cytosol | 37.38 | 12.99 |
| CDY52912 | Canola | cytosol | 35.51 | 12.75 |
| CDX88983 | Canola | cytosol | 32.71 | 12.64 |
| CDX71958 | Canola | cytosol | 35.51 | 12.62 |
| CDY23318 | Canola | cytosol | 30.84 | 12.45 |
| CDX98280 | Canola | cytosol | 32.71 | 12.2 |
| CDX67732 | Canola | cytosol | 32.71 | 12.2 |
| CDY06045 | Canola | cytosol | 34.58 | 12.09 |
| CDX69523 | Canola | cytosol | 31.78 | 12.06 |
| CDX90477 | Canola | cytosol | 29.91 | 11.76 |
| CDX98281 | Canola | cytosol | 27.1 | 11.74 |
| CDX88978 | Canola | cytosol | 29.91 | 11.68 |
| CDY00554 | Canola | cytosol | 29.91 | 11.64 |
| CDY06047 | Canola | cytosol | 34.58 | 11.35 |
| CDX67742 | Canola | cytosol | 32.71 | 11.22 |
| CDY17006 | Canola | cytosol | 27.1 | 11.11 |
| CDX67729 | Canola | cytosol | 27.1 | 10.82 |
| CDX67733 | Canola | cytosol | 31.78 | 10.4 |
| CDX98291 | Canola | cytosol | 27.1 | 10.07 |
| CDX88985 | Canola | extracellular | 17.76 | 9.9 |
| CDY00567 | Canola | plastid | 17.76 | 9.55 |
| CDY00562 | Canola | cytosol | 19.63 | 8.82 |
| CDX98283 | Canola | mitochondrion | 28.97 | 7.79 |
| CDX98282 | Canola | cytosol | 18.69 | 7.75 |
| CDX67743 | Canola | nucleus | 28.97 | 7.42 |
| CDX67734 | Canola | cytosol | 28.97 | 6.78 |
| CDY06046 | Canola | cytosol | 36.45 | 6.76 |
| CDX71959 | Canola | cytosol | 38.32 | 6.73 |
| CDY00558 | Canola | cytosol | 35.51 | 6.33 |
| CDX88980 | Canola | cytosol | 35.51 | 6.33 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 23.36 | 5.94 |
| CDX98294 | Canola | plastid | 18.69 | 5.26 |
| CDX98284 | Canola | cytosol | 28.04 | 5.12 |
| CDX84400 | Canola | nucleus | 3.74 | 3.28 |
| CDY17817 | Canola | cytosol | 2.8 | 1.69 |
| CDY09631 | Canola | cytosol | 0.93 | 0.95 |
| CDY00559 | Canola | nucleus | 0.0 | 0.0 |
| CDX67728 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY00560 | EnsemblPlantsGene:GSBRNA2T00110312001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002083 |
| InterPro:MATH/TRAF_dom | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 | PFscan:PS50144 | ProteinID:CDY00560 | ProteinID:CDY00560.1 |
| SEG:seg | UniParc:UPI0004EEB991 | MapMan:35.2 | : | : | : |
Description
BnaC04g23650D
Coordinates
chrLK031920:-:299071..299539
Molecular Weight (calculated)
12291.8 Da
IEP (calculated)
4.679
GRAVY (calculated)
-0.100
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MQWFYPMKTD LAYTSVVLLP KFLDKDSGFL VNNQVKIVVE VDALQDIPVE TEKTEEKDVV LLKEGSSIME SIDVNGFHVF RSQVGSVRRL FEKHPDIAVD
101: FVQRTNM
101: FVQRTNM
001: MGKEVDNKFT WVIKNFSSQQ SRKNYSDEFF VDGCKWRLLA FPKGNGVEKL SLYLAVAGSE FLPDGWRRHA YFHFSVVNQL SDELSQARET KNWFDASTSD
101: WGFTSMLSLK KLHDKDGGFL VNGELKIVVD VSVLEVIGKL DVPVESEETT TKALSELEEN DVPEESEETT KALSKVDEND GAESNDSLKE ASSVKESMDV
201: NGFRVLPSQV ETVSCIFERH PDIASEFGPK NQHLRSAYMN VLLSLIKTMC QSTQELSKDD LSDADAALAY LTDAGLNLNW LEEKLEEVSE KKENEEAGET
301: RVHEIEEELK ELKLKCSNLE AQLEKEKADV SVARAPFSFD DIV
101: WGFTSMLSLK KLHDKDGGFL VNGELKIVVD VSVLEVIGKL DVPVESEETT TKALSELEEN DVPEESEETT KALSKVDEND GAESNDSLKE ASSVKESMDV
201: NGFRVLPSQV ETVSCIFERH PDIASEFGPK NQHLRSAYMN VLLSLIKTMC QSTQELSKDD LSDADAALAY LTDAGLNLNW LEEKLEEVSE KKENEEAGET
301: RVHEIEEELK ELKLKCSNLE AQLEKEKADV SVARAPFSFD DIV
Arabidopsis Description
MATH domain and coiled-coil domain-containing protein At3g58270 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2I9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.