CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G58360.1	Thale cress	cytosol	52.26	69.8
CDY52912	Canola	cytosol	52.01	69.46
CDX67728	Canola	cytosol	6.78	64.29
CDX67730	Canola	cytosol	42.46	56.9
CDX67732	Canola	cytosol	40.7	56.45
CDX98280	Canola	cytosol	40.45	56.1
CDY17006	Canola	cytosol	33.67	51.34
CDX67729	Canola	cytosol	33.92	50.37
CDX98282	Canola	cytosol	31.16	48.06
CDY00554	Canola	cytosol	32.16	46.55
CDX88978	Canola	cytosol	31.91	46.35
CDX98278	Canola	cytosol	24.87	45.21
CDX98279	Canola	cytosol	30.65	45.19
CDY23318	Canola	cytosol	29.65	44.53
CDX69523	Canola	cytosol	30.9	43.62
CDX88982	Canola	cytosol	12.81	43.59
CDY53703	Canola	cytosol	29.4	43.01
CDY09631	Canola	cytosol	11.31	42.86
CDY06044	Canola	cytosol	26.38	42.68
CDY06045	Canola	cytosol	32.66	42.48
CDX71960	Canola	cytosol	15.33	42.36
CDY23317	Canola	cytosol	28.89	42.28
CDY00562	Canola	cytosol	25.13	42.02
CDX90477	Canola	cytosol	28.39	41.54
CDX88985	Canola	extracellular	19.85	41.15
CDX67741	Canola	cytosol	18.34	40.33
CDY06047	Canola	cytosol	32.91	40.18
CDX88983	Canola	cytosol	27.89	40.07
CDY00566	Canola	cytosol	28.89	39.66
CDX84400	Canola	nucleus	11.81	38.52
CDX98281	Canola	cytosol	23.62	38.06
CDX88984	Canola	cytosol	29.65	37.94
CDX98291	Canola	cytosol	27.14	37.5
CDX71958	Canola	cytosol	27.89	36.88
CDY00561	Canola	cytosol	13.82	36.67
CDX88981	Canola	extracellular	19.85	36.41
CDY06042	Canola	cytosol	28.14	36.36
CDY00564	Canola	cytosol	17.34	35.75
CDX88980	Canola	cytosol	52.26	34.67
CDY00558	Canola	cytosol	52.01	34.5
CDY17817	Canola	cytosol	15.33	34.27
CDY00567	Canola	plastid	17.09	34.17
CDX67742	Canola	cytosol	26.38	33.65
CDX67733	Canola	cytosol	27.64	33.64
CDY00560	Canola	cytosol	7.79	28.97
CDY06043	Canola	cytosol, golgi, mitochondrion, peroxisome	26.63	25.18
CDX98294	Canola	plastid	22.86	23.95
CDX67734	Canola	cytosol	27.14	23.63
CDX67743	Canola	nucleus	24.12	22.97
CDY06046	Canola	cytosol	32.91	22.7
CDX98284	Canola	cytosol	30.65	20.82
CDX71959	Canola	cytosol	26.88	17.57
CDY00559	Canola	nucleus	7.79	15.82

Protein Annotations

EnsemblPlants:CDX98283	EnsemblPlantsGene:GSBRNA2T00105815001	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	ncoils:Coil	PANTHER:PTHR24007
PANTHER:PTHR24007:SF12	PFAM:PF00917	PFscan:PS50144	ProteinID:CDX98283	ProteinID:CDX98283.1	SEG:seg
SMART:SM00061	SUPFAM:SSF49599	UniParc:UPI0004EEC5DA	MapMan:35.1	:	:

Description

BnaC06g16440D

Coordinates

chrLK031904:-:339112..342483

Molecular Weight (calculated)

46321.8 Da

IEP (calculated)

5.076

GRAVY (calculated)

-0.591

Length

398 amino acids

Sequence
(BLAST)

001: MWILSLAQGI MGRQLRKRIT WAIKNFSSLR SEKLYSDPFV AGGCKWRLCA YPKGNNADYL FLFLDVADYK SLPFGWRRQA RYLLNIVNQS SSKRSRQNDA
101: EKWFDAETPR WGRLSMFPLN EIKESGFLVN GELKIVAEIE VLEVIGKLDV AEETSTMTET IDVNGFQLLP SQTPEIASEF HTENPNLRTG YMSLLLSLIE
201: TLRQPPHEIL TTDLDKAYAA LGSLTNAGFK LDWLDKKLVE MSEKKEKEEA GESQMREIEE ELKGLKQKCS DLEVQLQKQK KSEVSAAKAT ISFDDVRKMR
301: SFKLSNHIGN VFGNWICMLW FRFERDRPLF SKMGNGISTM VKLIKKFQND NAYGDDCVHR DDAHSEDSSD HYEYDDDWSD YYEDYWEWDY DDLKWIRS

Best Arabidopsis Sequence Match ( AT3G58360.1 )
(BLAST)

001: MGKQLAKKIT WAIENFSSLH SKKIYSDPFI VGGCKWRFLV YPKGNNVDYL FLYLEVADYE SLSPEWRRHA RYLLNVVNQN SVKRSKQNEE QKWFDVQSPR
101: WGRLSMFPLN EINAKDSGFL VNGELKIVAE IEVLEVIGKL DVSEETSTIM ESMDFNGFQL LPSQVDFVRH MFEKHPEIAS EFRLKNPNLR AGYMSLLLSL
201: IETLRQSPQE LNKVDLAEGY VALRSITDAG FKVDWLEKKL VEISEKKNKE EAGETRMQEI NEELESLKQK CLDLEAQLEK EKAEVFAAKS PLSFNDVF

Arabidopsis Description

MATH domain and coiled-coil domain-containing protein At3g58360 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2I0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.