Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014573.1-P | Field mustard | cytosol, extracellular, plastid | 47.93 | 99.05 |
| CDY00560 | Canola | cytosol | 42.86 | 86.92 |
| CDX88982 | Canola | cytosol | 36.41 | 67.52 |
| CDX67741 | Canola | cytosol | 45.62 | 54.7 |
| CDY00561 | Canola | cytosol | 36.87 | 53.33 |
| CDX88985 | Canola | extracellular | 43.78 | 49.48 |
| CDY00564 | Canola | cytosol | 43.78 | 49.22 |
| CDY00567 | Canola | plastid | 42.4 | 46.23 |
| CDX71960 | Canola | cytosol | 30.41 | 45.83 |
| CDX67728 | Canola | cytosol | 8.76 | 45.24 |
| CDY09631 | Canola | cytosol | 21.2 | 43.81 |
| CDY00566 | Canola | cytosol | 52.53 | 39.31 |
| CDX98291 | Canola | cytosol | 48.85 | 36.81 |
| CDX69523 | Canola | cytosol | 47.47 | 36.52 |
| CDX71958 | Canola | cytosol | 48.85 | 35.22 |
| CDX88984 | Canola | cytosol | 50.23 | 35.05 |
| CDX88983 | Canola | cytosol | 44.24 | 34.66 |
| CDY06042 | Canola | cytosol | 48.39 | 34.09 |
| CDX67730 | Canola | cytosol | 46.08 | 33.67 |
| CDX84400 | Canola | nucleus | 18.89 | 33.61 |
| CDY06044 | Canola | cytosol | 37.79 | 33.33 |
| CDY52912 | Canola | cytosol | 44.24 | 32.21 |
| CDY00559 | Canola | nucleus | 29.03 | 32.14 |
| CDY00562 | Canola | cytosol | 33.64 | 30.67 |
| CDX67729 | Canola | cytosol | 37.79 | 30.6 |
| CDX98278 | Canola | cytosol | 30.88 | 30.59 |
| CDX90477 | Canola | cytosol | 38.25 | 30.51 |
| CDX67732 | Canola | cytosol | 39.63 | 29.97 |
| CDY17006 | Canola | cytosol | 35.48 | 29.5 |
| CDY06045 | Canola | cytosol | 41.47 | 29.41 |
| CDX98280 | Canola | cytosol | 38.71 | 29.27 |
| CDX88978 | Canola | cytosol | 36.87 | 29.2 |
| CDY17817 | Canola | cytosol | 23.5 | 28.65 |
| CDY00554 | Canola | cytosol | 35.94 | 28.36 |
| CDY53703 | Canola | cytosol | 35.48 | 28.31 |
| CDX98279 | Canola | cytosol | 35.02 | 28.15 |
| CDY06047 | Canola | cytosol | 41.94 | 27.91 |
| CDY23317 | Canola | cytosol | 34.1 | 27.21 |
| CDX98282 | Canola | cytosol | 32.26 | 27.13 |
| CDY23318 | Canola | cytosol | 32.72 | 26.79 |
| CDX98281 | Canola | cytosol | 29.95 | 26.32 |
| CDX67742 | Canola | cytosol | 35.48 | 24.68 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 43.78 | 22.57 |
| CDX67733 | Canola | cytosol | 30.88 | 20.49 |
| CDX98283 | Canola | mitochondrion | 36.41 | 19.85 |
| CDX67734 | Canola | cytosol | 37.33 | 17.72 |
| CDX98294 | Canola | plastid | 29.49 | 16.84 |
| CDY00558 | Canola | cytosol | 43.32 | 15.67 |
| CDY06046 | Canola | cytosol | 41.47 | 15.6 |
| CDX88980 | Canola | cytosol | 42.86 | 15.5 |
| CDX67743 | Canola | nucleus | 29.03 | 15.07 |
| CDX71959 | Canola | cytosol | 40.09 | 14.29 |
| CDX98284 | Canola | cytosol | 37.33 | 13.82 |
Protein Annotations
| EnsemblPlants:CDX88981 | EnsemblPlantsGene:GSBRNA2T00149092001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002083 |
| InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 |
| PFscan:PS50144 | ProteinID:CDX88981 | ProteinID:CDX88981.1 | SUPFAM:SSF49599 | UniParc:UPI0004EF33F3 | MapMan:35.1 |
Description
BnaA04g02050D
Coordinates
chrLK031857:-:372201..372981
Molecular Weight (calculated)
24778.9 Da
IEP (calculated)
4.557
GRAVY (calculated)
-0.245
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MQWFYPMTMD LAYTSVVLLP KFLDKDSGFL VNDQVKIVVE VDALQDIPVE TEKTEENDCV LLKEGSSIME SIDVNGFHVF PSQVGYVGRL FEKHPDIAVD
101: FRAKNQHVRR ACMSSLLGLI QTLCKSLQEL SNEDLIEADI ALKYVKDAGF KIDWLEKNLD QVKEKKLKEL SGLAMLQETE EKALRLKRKF EELDALAEEQ
201: KKELSATRTS LTFDDVV
101: FRAKNQHVRR ACMSSLLGLI QTLCKSLQEL SNEDLIEADI ALKYVKDAGF KIDWLEKNLD QVKEKKLKEL SGLAMLQETE EKALRLKRKF EELDALAEEQ
201: KKELSATRTS LTFDDVV
001: MEKQAHKKFC WIIKNFSPQS ERLYSVPVLI GDCKWRPIAY PIRDKYFSLC LQVVDFESLP CGWGRYVELR LTLRNQHNSL NLSIKADHCF DEKRTTWGIP
101: IPERIPICKL QTELYQSEHV VKGDFKIIAE VDVFEAVGTL TESDISGKAS ELLTKKIRND GNESGDLLKK TSPEKESNHV NESKPVRKLR NFVVLYKRHA
201: AMCSVLQEPI CLLGIFHYTN GEASWAEVRV GVFLLNMTLC LPDSQLFPSE VVKARLTIVN QLSEKLSISK ESEHCFDEQN PTLGYTFPYE LLVEDGGFLV
301: NEDLMIIVEV IGASDVFEDS STQGKVDVNG FQVLPSQVEY VRSIFERHPD IAVEFRAKNQ HLRTSCMIFL LSLIETLCQS LEELSNEDLV EADIALTYVK
401: DAGFKVDWLE KKLDQVKEKK EKELSDMVQL QEMEDHLLKL KQSCSDLDDL VVKKKDELSV TRSPLSFDDV V
101: IPERIPICKL QTELYQSEHV VKGDFKIIAE VDVFEAVGTL TESDISGKAS ELLTKKIRND GNESGDLLKK TSPEKESNHV NESKPVRKLR NFVVLYKRHA
201: AMCSVLQEPI CLLGIFHYTN GEASWAEVRV GVFLLNMTLC LPDSQLFPSE VVKARLTIVN QLSEKLSISK ESEHCFDEQN PTLGYTFPYE LLVEDGGFLV
301: NEDLMIIVEV IGASDVFEDS STQGKVDVNG FQVLPSQVEY VRSIFERHPD IAVEFRAKNQ HLRTSCMIFL LSLIETLCQS LEELSNEDLV EADIALTYVK
401: DAGFKVDWLE KKLDQVKEKK EKELSDMVQL QEMEDHLLKL KQSCSDLDDL VVKKKDELSV TRSPLSFDDV V
Arabidopsis Description
TRAF-like family protein [Source:TAIR;Acc:AT3G58430]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.