CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88980	Canola	cytosol	95.0	95.0
CDY52912	Canola	cytosol	43.5	87.58
AT3G58360.1	Thale cress	cytosol	33.0	66.44
CDX67728	Canola	cytosol	4.5	64.29
CDX67730	Canola	cytosol	28.83	58.25
CDX67732	Canola	cytosol	27.83	58.19
CDX98280	Canola	cytosol	27.5	57.49
CDX88982	Canola	cytosol	10.5	53.85
CDX98283	Canola	mitochondrion	34.5	52.01
CDX67729	Canola	cytosol	23.17	51.87
CDX98282	Canola	cytosol	21.5	50.0
CDY17006	Canola	cytosol	21.67	49.81
CDY00554	Canola	cytosol	22.67	49.45
CDX88978	Canola	cytosol	22.33	48.91
CDX88985	Canola	extracellular	15.5	48.44
CDY23318	Canola	cytosol	21.33	48.3
CDY09631	Canola	cytosol	8.33	47.62
CDX67741	Canola	cytosol	14.17	46.96
CDY53703	Canola	cytosol	21.17	46.69
CDX98279	Canola	cytosol	21.0	46.67
CDX71960	Canola	cytosol	11.0	45.83
CDX69523	Canola	cytosol	21.5	45.74
CDY00561	Canola	cytosol	11.33	45.33
CDY23317	Canola	cytosol	20.33	44.85
CDY06044	Canola	cytosol	18.33	44.72
CDX88984	Canola	cytosol	23.17	44.69
CDY00562	Canola	cytosol	17.67	44.54
CDY00566	Canola	cytosol	21.33	44.14
CDX98278	Canola	cytosol	16.0	43.84
CDX90477	Canola	cytosol	19.83	43.75
CDX98291	Canola	cytosol	20.83	43.4
CDX88981	Canola	extracellular	15.67	43.32
CDY06045	Canola	cytosol	22.0	43.14
CDX88983	Canola	cytosol	19.67	42.6
CDY06047	Canola	cytosol	22.5	41.41
CDY00567	Canola	plastid	13.67	41.21
CDY06042	Canola	cytosol	20.83	40.58
CDX71958	Canola	cytosol	19.5	38.87
CDX98281	Canola	cytosol	16.0	38.87
CDY00564	Canola	cytosol	12.17	37.82
CDX84400	Canola	nucleus	7.67	37.7
CDX67742	Canola	cytosol	18.67	35.9
CDY00560	Canola	cytosol	6.33	35.51
CDX67733	Canola	cytosol	19.0	34.86
CDY17817	Canola	cytosol	10.17	34.27
CDX67734	Canola	cytosol	22.5	29.54
CDX67743	Canola	nucleus	20.17	28.95
CDY06043	Canola	cytosol, golgi, mitochondrion, peroxisome	18.17	25.89
CDX98284	Canola	cytosol	24.83	25.43
CDY06046	Canola	cytosol	24.33	25.3
CDX98294	Canola	plastid	16.0	25.26
CDX71959	Canola	cytosol	18.67	18.39
CDY00559	Canola	nucleus	5.5	16.84

Protein Annotations

EnsemblPlants:CDY00558	EnsemblPlantsGene:GSBRNA2T00110309001	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	ncoils:Coil	PANTHER:PTHR24007
PANTHER:PTHR24007:SF12	PFAM:PF00917	PFscan:PS50144	ProteinID:CDY00558	ProteinID:CDY00558.1	SEG:seg
SMART:SM00061	SUPFAM:SSF49599	UniParc:UPI0004EDB0B6	MapMan:35.1	:	:

Description

BnaC04g23670D

Coordinates

chrLK031920:-:279327..283026

Molecular Weight (calculated)

68986.6 Da

IEP (calculated)

5.148

GRAVY (calculated)

-0.496

Length

600 amino acids

Sequence
(BLAST)

001: MGEHSMKKIT WTIKNFSSLQ REKLCSDPFV VGRCEWRLCA YPKGNNVDYL FLFLEVADHE SLPCGWRRNV RFSLSIVNQN TIKRSRQNDE QKWFGEESPR
101: WGRVSMFPLN EIHAKESGYL VNGEFKIVAE IAVIAAIGKL DIAEETSTII ETMDVNGFQL FPSQMELVSR LLERHPEIAS DIRTKNPNLR MGYMSLLLSL
201: IETLRQSPHK LSKTDLAEAD AALGSLTNAE FKLDWLEKKL DEMAEKKEKE EAGEARVREI EEDLKDLNQK CSDLEAQLEK QKLELSAAKT PISFDDLDLR
301: TIMEKQSRKK ITWTIKNFSS LQCQKLCSDP FVVARCKWRL CTYPKGKNVD YLFLFLEVAD HDSLPCGWRR NVRYSLSIIN QNSVKRSRQN DEQKWFDEKT
401: PRRGRVSMFP LNEIHAKESG YLVNGELKIV AEIEVIEVLG KFDVTEETST ITETMDVNGF QLLPSQMELV SRLLERHPDI ASEFSTKNPN LRTGYMSLLL
501: SIIETLRHSP HELSNTDLAE ADAALGSMAN AGFKLDWLEN KLDEMAEKKE KEEGGEIRVR EIEEELKDLK QKCLDLEVQL EKEKLELSAA KAPISFDDVM

Best Arabidopsis Sequence Match ( AT3G58360.1 )
(BLAST)

001: MGKQLAKKIT WAIENFSSLH SKKIYSDPFI VGGCKWRFLV YPKGNNVDYL FLYLEVADYE SLSPEWRRHA RYLLNVVNQN SVKRSKQNEE QKWFDVQSPR
101: WGRLSMFPLN EINAKDSGFL VNGELKIVAE IEVLEVIGKL DVSEETSTIM ESMDFNGFQL LPSQVDFVRH MFEKHPEIAS EFRLKNPNLR AGYMSLLLSL
201: IETLRQSPQE LNKVDLAEGY VALRSITDAG FKVDWLEKKL VEISEKKNKE EAGETRMQEI NEELESLKQK CLDLEAQLEK EKAEVFAAKS PLSFNDVF

Arabidopsis Description

MATH domain and coiled-coil domain-containing protein At3g58360 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2I0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.