Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67728 | Canola | cytosol | 11.24 | 47.62 |
| CDY09631 | Canola | cytosol | 23.03 | 39.05 |
| CDY17006 | Canola | cytosol | 50.56 | 34.48 |
| CDX88982 | Canola | cytosol | 22.47 | 34.19 |
| CDX71960 | Canola | cytosol | 25.84 | 31.94 |
| AT2G05400.3 | Thale cress | cytosol | 37.08 | 30.41 |
| CDX67741 | Canola | cytosol | 30.9 | 30.39 |
| CDX84400 | Canola | nucleus | 20.79 | 30.33 |
| CDX88985 | Canola | extracellular | 30.34 | 28.12 |
| CDY00561 | Canola | cytosol | 23.03 | 27.33 |
| CDY00567 | Canola | plastid | 30.34 | 27.14 |
| CDX67729 | Canola | cytosol | 35.96 | 23.88 |
| CDX88981 | Canola | extracellular | 28.65 | 23.5 |
| CDY52912 | Canola | cytosol | 37.64 | 22.48 |
| AT2G05410.2 | Thale cress | cytosol | 37.08 | 21.78 |
| CDX98282 | Canola | cytosol | 31.46 | 21.71 |
| CDX67732 | Canola | cytosol | 34.83 | 21.6 |
| CDX67730 | Canola | cytosol | 35.96 | 21.55 |
| CDX98291 | Canola | cytosol | 34.83 | 21.53 |
| CDX98280 | Canola | cytosol | 34.27 | 21.25 |
| CDX69523 | Canola | cytosol | 32.58 | 20.57 |
| CDX88978 | Canola | cytosol | 31.46 | 20.44 |
| CDX88983 | Canola | cytosol | 31.46 | 20.22 |
| CDY00562 | Canola | cytosol | 26.97 | 20.17 |
| CDY00554 | Canola | cytosol | 30.9 | 20.0 |
| AT2G05420.1 | Thale cress | cytosol | 32.02 | 19.19 |
| CDX71958 | Canola | cytosol | 32.02 | 18.94 |
| CDY00564 | Canola | cytosol | 20.22 | 18.65 |
| CDX88984 | Canola | cytosol | 30.9 | 17.68 |
| CDY06045 | Canola | cytosol | 30.34 | 17.65 |
| CDY06042 | Canola | cytosol | 30.34 | 17.53 |
| CDY00566 | Canola | cytosol | 27.53 | 16.9 |
| CDY06047 | Canola | cytosol | 30.9 | 16.87 |
| CDY23318 | Canola | cytosol | 24.16 | 16.23 |
| CDY00559 | Canola | nucleus | 17.42 | 15.82 |
| CDX90477 | Canola | cytosol | 24.16 | 15.81 |
| CDY23317 | Canola | cytosol | 23.6 | 15.44 |
| CDX98283 | Canola | mitochondrion | 34.27 | 15.33 |
| CDX98281 | Canola | cytosol | 20.79 | 14.98 |
| CDY53703 | Canola | cytosol | 22.47 | 14.71 |
| CDX98294 | Canola | plastid | 30.34 | 14.21 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 32.02 | 13.54 |
| CDX98279 | Canola | cytosol | 20.22 | 13.33 |
| CDX67733 | Canola | cytosol | 24.16 | 13.15 |
| CDY06044 | Canola | cytosol | 17.98 | 13.01 |
| CDX98278 | Canola | cytosol | 14.04 | 11.42 |
| CDX67742 | Canola | cytosol | 19.66 | 11.22 |
| CDX67734 | Canola | cytosol | 28.09 | 10.94 |
| CDX88980 | Canola | cytosol | 34.83 | 10.33 |
| CDX98284 | Canola | cytosol | 33.71 | 10.24 |
| CDY00558 | Canola | cytosol | 34.27 | 10.17 |
| CDY06046 | Canola | cytosol | 30.34 | 9.36 |
| CDX67743 | Canola | nucleus | 20.22 | 8.61 |
| CDX71959 | Canola | cytosol | 16.85 | 4.93 |
| CDY00560 | Canola | cytosol | 1.69 | 2.8 |
Protein Annotations
| EnsemblPlants:CDY17817 | EnsemblPlantsGene:GSBRNA2T00002101001 | ncoils:Coil | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 | ProteinID:CDY17817 |
| ProteinID:CDY17817.1 | SEG:seg | UniParc:UPI0004EEC25B | UniProt:A0A078FYC9 | MapMan:35.1 | : |
Description
BnaC08g04310DBnaC08g04310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYC9]
Coordinates
chrLK032078:+:203086..204026
Molecular Weight (calculated)
20775.2 Da
IEP (calculated)
8.882
GRAVY (calculated)
-0.540
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSCCKNENH EIYFEILRRR NIGIFTSNRN HGCQCISRPT FTSRICKPFV WKTPRYCIKF RTKNPYLNTA YMNVLLSLTQ TLCQSPWEIS KDDLAEEYAA
101: LSYLTAEGFQ LDWLGKKLDE VKVKKKKEKA CLAQLREIEK ELQPLKRKYS EMEAQMDKVK AELSAAKSPV SLYDEDVA
101: LSYLTAEGFQ LDWLGKKLDE VKVKKKKEKA CLAQLREIEK ELQPLKRKYS EMEAQMDKVK AELSAAKSPV SLYDEDVA
001: MISLTELHAE EGLLRNGELT VVAKVEVLEV VGKLDVSEES SPVIETIDVN GFQVLPSQVE YAKSLFERHL DIASKFRPKN PYLKTAYMNV LLSLTQTICQ
101: SPQELSNDDL SDAGAALAYL REAGFELDWL EKKLNEVKEK KKKEEACLAE IQDMDEHVKP LKKKYLDLEA QIDKKKAELL AARAPLSLND DNVV
101: SPQELSNDDL SDAGAALAYL REAGFELDWL EKKLNEVKEK KKKEEACLAE IQDMDEHVKP LKKKYLDLEA QIDKKKAELL AARAPLSLND DNVV
Arabidopsis Description
Ubiquitin-specific protease family C19-related protein [Source:UniProtKB/TrEMBL;Acc:Q9SHT4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.