Factsheet for AT2G05410.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G05400.3	Thale cress	cytosol	48.18	67.28
AT2G05420.1	Thale cress	cytosol	60.4	61.62
CDY17006	Canola	cytosol	47.85	55.56
AT3G58360.1	Thale cress	cytosol	52.81	53.69
Bra014088.1-P	Field mustard	cytosol	46.86	52.79
AT3G58350.1	Thale cress	cytosol	51.49	51.83
AT3G58370.1	Thale cress	cytosol	49.84	50.0
AT3G58210.1	Thale cress	plastid	54.13	49.7
AT1G31390.1	Thale cress	cytosol	43.56	49.25
AT2G01790.1	Thale cress	cytosol	42.57	47.96
AT3G58250.1	Thale cress	cytosol	50.16	47.95
AT3G58260.1	Thale cress	cytosol, golgi, mitochondrion, plastid	49.84	47.04
AT3G58400.1	Thale cress	extracellular	44.88	46.42
AT1G31400.1	Thale cress	cytosol	42.57	46.4
AT3G58200.1	Thale cress	cytosol	48.84	46.4
AT1G31380.1	Thale cress	cytosol	26.73	46.29
AT3G27040.1	Thale cress	cytosol	41.25	46.13
AT3G44790.1	Thale cress	cytosol	48.84	45.68
AT3G58270.3	Thale cress	cytosol	50.83	44.9
AT1G31370.1	Thale cress	cytosol	27.72	43.52
AT3G58340.1	Thale cress	cytosol	46.53	43.38
AT3G58410.1	Thale cress	cytosol	46.86	43.29
AT3G44800.1	Thale cress	cytosol	48.84	43.27
AT3G58320.1	Thale cress	nucleus	31.35	42.41
AT3G29580.1	Thale cress	cytosol	41.58	41.18
AT3G58240.1	Thale cress	cytosol	40.92	39.12
AT3G58380.1	Thale cress	cytosol	38.28	37.78
CDY17817	Canola	cytosol	21.78	37.08
AT3G44805.1	Thale cress	cytosol	27.06	33.06
AT3G58220.2	Thale cress	cytosol	45.21	30.24
AT3G58430.1	Thale cress	cytosol	44.22	28.45
AT3G58440.1	Thale cress	cytosol	41.25	20.8

Protein Annotations

Gene3D:2.60.210.10	MapMan:35.1	EntrezGene:815089	ProteinID:AAD32896.1	ProteinID:AEC05927.1	ProteinID:ANM61502.1
ArrayExpress:AT2G05410	EnsemblPlantsGene:AT2G05410	RefSeq:AT2G05410	TAIR:AT2G05410	RefSeq:AT2G05410-TAIR-G	EnsemblPlants:AT2G05410.2
Unigene:At.52648	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	RefSeq:NP_001323718.1	RefSeq:NP_178609.1	PFAM:PF00917
PFscan:PS50144	PANTHER:PTHR24007	PANTHER:PTHR24007:SF12	UniProt:Q9SHT3	SMART:SM00061	SUPFAM:SSF49599
InterPro:TRAF-like	UniParc:UPI00045BE16A	SEG:seg	:	:	:

Description

MATH domain and coiled-coil domain-containing protein At2g05410 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHT3]

Coordinates

chr2:+:1977204..1978553

Molecular Weight (calculated)

34505.8 Da

IEP (calculated)

6.920

GRAVY (calculated)

-0.259

Length

303 amino acids

Sequence
(BLAST)

001: METTVDTTIT WVIKNFSSLQ SAPIYSDIFV VGGCKWRIMA YPKGINKAHD SFSLFLNVPD NESLPTGWRR HAKVSFSLVN QGSEKLSQRK VTQHWFVQKA
101: FTWGFPVMIT HTELNAKMGF LVNGELKVVA KIEVLEVVGK LDVSKESSPI MKTIDVNGFQ VLPSQVDSVK RLFEKNLDIV SKFRLKNPYL KTACMNLLLS
201: LTETLCQSPQ ELSNDGLSDA GVALAYLIET GLKLDWLEKK LDELKEKKKK EESCLVRLRE MDEQLQPFKK RCLDIEDQIS KEKEELLAAR EPLSLYDDID
301: NNV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.