Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G31380.1 | Thale cress | cytosol | 42.16 | 64.57 |
| AT1G31400.1 | Thale cress | cytosol | 66.79 | 64.39 |
| AT1G31370.1 | Thale cress | cytosol | 40.67 | 56.48 |
| AT2G01790.1 | Thale cress | cytosol | 48.88 | 48.7 |
| AT3G27040.1 | Thale cress | cytosol | 48.13 | 47.6 |
| AT2G05420.1 | Thale cress | cytosol | 49.63 | 44.78 |
| AT3G58360.1 | Thale cress | cytosol | 49.25 | 44.3 |
| AT2G05410.2 | Thale cress | cytosol | 49.25 | 43.56 |
| AT3G58350.1 | Thale cress | cytosol | 48.88 | 43.52 |
| AT3G58370.1 | Thale cress | cytosol | 48.88 | 43.38 |
| AT3G58260.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 50.0 | 41.74 |
| AT2G05400.3 | Thale cress | cytosol | 33.21 | 41.01 |
| AT3G58200.1 | Thale cress | cytosol | 48.51 | 40.75 |
| AT3G58210.1 | Thale cress | plastid | 49.25 | 40.0 |
| AT3G58400.1 | Thale cress | extracellular | 43.28 | 39.59 |
| AT3G58340.1 | Thale cress | cytosol | 47.76 | 39.38 |
| AT3G44790.1 | Thale cress | cytosol | 47.39 | 39.2 |
| AT3G58250.1 | Thale cress | cytosol | 45.52 | 38.49 |
| AT3G58410.1 | Thale cress | cytosol | 46.27 | 37.8 |
| AT3G58270.3 | Thale cress | cytosol | 48.13 | 37.61 |
| AT3G29580.1 | Thale cress | cytosol | 41.79 | 36.6 |
| AT3G44800.1 | Thale cress | cytosol | 46.27 | 36.26 |
| AT3G58380.1 | Thale cress | cytosol | 40.3 | 35.18 |
| AT3G58240.1 | Thale cress | cytosol | 39.55 | 33.44 |
| AT3G58320.1 | Thale cress | nucleus | 25.37 | 30.36 |
| AT3G44805.1 | Thale cress | cytosol | 27.61 | 29.84 |
| AT3G58220.2 | Thale cress | cytosol | 41.79 | 24.72 |
| AT3G58430.1 | Thale cress | cytosol | 41.79 | 23.78 |
| AT3G58440.1 | Thale cress | cytosol | 38.06 | 16.97 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.1 | ArrayExpress:AT1G31390 | EnsemblPlantsGene:AT1G31390 | RefSeq:AT1G31390 | TAIR:AT1G31390 |
| RefSeq:AT1G31390-TAIR-G | EnsemblPlants:AT1G31390.1 | TAIR:AT1G31390.1 | Unigene:At.51855 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | PFAM:PF00917 | PFscan:PS50144 |
| PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 | SMART:SM00061 | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI00000A4EF8 |
| SEG:seg | : | : | : | : | : |
Description
TRAF-like family protein [Source:TAIR;Acc:AT1G31390]
Coordinates
chr1:-:11243182..11244392
Molecular Weight (calculated)
30718.7 Da
IEP (calculated)
4.792
GRAVY (calculated)
-0.277
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDQYEKKIT WTIKNFSFVQ SQAIDSDIFV VGDSKWHLVA YPKGNGESTN KCLSLYLNVA DFQSLPNGWK RHIKYRLTVV NQMSEKLSEQ EVIQGWFYKN
101: FHISGFQTML PLSKLLDKNG GFLVNGDVKI VVEVGVLEVV GKSDVLEETL LVHESIDING FQVLPSQVES VNNLFEKHPD IVSEFRSKNP LMRTTYLNDL
201: LCLTEILCES SEELSTGDMA NAYSTLTCLK KAGFKLDWLE KKLKEVCEAR VQEIDEEWKD LTDLKEKF
101: FHISGFQTML PLSKLLDKNG GFLVNGDVKI VVEVGVLEVV GKSDVLEETL LVHESIDING FQVLPSQVES VNNLFEKHPD IVSEFRSKNP LMRTTYLNDL
201: LCLTEILCES SEELSTGDMA NAYSTLTCLK KAGFKLDWLE KKLKEVCEAR VQEIDEEWKD LTDLKEKF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.