Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G31380.1 | Thale cress | cytosol | 26.14 | 45.71 |
| AT3G58350.1 | Thale cress | cytosol | 43.79 | 44.52 |
| AT3G44790.1 | Thale cress | cytosol | 46.73 | 44.14 |
| AT3G58250.1 | Thale cress | cytosol | 45.42 | 43.85 |
| AT3G58370.1 | Thale cress | cytosol | 42.81 | 43.38 |
| AT3G58210.1 | Thale cress | plastid | 46.41 | 43.03 |
| AT3G58360.1 | Thale cress | cytosol | 41.83 | 42.95 |
| AT2G05400.3 | Thale cress | cytosol | 30.07 | 42.4 |
| AT3G58200.1 | Thale cress | cytosol | 44.12 | 42.32 |
| AT1G31390.1 | Thale cress | cytosol | 36.6 | 41.79 |
| AT3G58270.3 | Thale cress | cytosol | 46.73 | 41.69 |
| AT3G58400.1 | Thale cress | extracellular | 39.87 | 41.64 |
| AT2G05410.2 | Thale cress | cytosol | 41.18 | 41.58 |
| AT2G01790.1 | Thale cress | cytosol | 35.95 | 40.89 |
| AT2G05420.1 | Thale cress | cytosol | 39.22 | 40.4 |
| AT3G27040.1 | Thale cress | cytosol | 35.29 | 39.85 |
| AT3G58410.1 | Thale cress | cytosol | 42.16 | 39.33 |
| AT3G58340.1 | Thale cress | cytosol | 41.18 | 38.77 |
| AT3G58260.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 40.52 | 38.63 |
| AT1G31400.1 | Thale cress | cytosol | 34.31 | 37.77 |
| AT1G31370.1 | Thale cress | cytosol | 23.53 | 37.31 |
| AT3G44800.1 | Thale cress | cytosol | 41.5 | 37.13 |
| AT3G58380.1 | Thale cress | cytosol | 35.95 | 35.83 |
| AT3G58320.1 | Thale cress | nucleus | 25.49 | 34.82 |
| AT3G58240.1 | Thale cress | cytosol | 35.29 | 34.07 |
| AT3G44805.1 | Thale cress | cytosol | 26.8 | 33.06 |
| AT3G58220.2 | Thale cress | cytosol | 39.54 | 26.71 |
| AT3G58430.1 | Thale cress | cytosol | 38.56 | 25.05 |
| AT3G58440.1 | Thale cress | cytosol | 35.29 | 17.97 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.1 | EntrezGene:822622 | ProteinID:AEE77591.1 | ArrayExpress:AT3G29580 | EnsemblPlantsGene:AT3G29580 |
| RefSeq:AT3G29580 | TAIR:AT3G29580 | RefSeq:AT3G29580-TAIR-G | EnsemblPlants:AT3G29580.1 | TAIR:AT3G29580.1 | ProteinID:BAB01190.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR002083 |
| InterPro:IPR008974 | InterPro:MATH/TRAF_dom | RefSeq:NP_189599.1 | PFAM:PF00917 | PFAM:PF05278 | InterPro:PLipase-like |
| PFscan:PS50144 | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 | UniProt:Q9LJB5 | SUPFAM:SSF49599 | InterPro:TRAF-like |
| UniParc:UPI000009D51A | SEG:seg | : | : | : | : |
Description
MATH domain and coiled-coil domain-containing protein At3g29580 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJB5]
Coordinates
chr3:-:11394675..11395871
Molecular Weight (calculated)
35042.4 Da
IEP (calculated)
5.559
GRAVY (calculated)
-0.236
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNLDDNKFT WVIKNVPTLN SDMLFSNYFV IGGCSWRVVA HSKENNFKES LSLTLIVAED SAQKMGCGWS RYAKIIFTLV NQISEILSQR IETMFDQKSS
101: VFSSETMFSI GKFDEHFAGF IVNGEIKIVV EFLEIIDKLV LSKESNPPFK KTKLNNDGEV SKDLIREVPV IMESIVVNGF HVLPSQVEFV KRIFEKHPDV
201: AKEFRPTNRI VKTAYMNVLL SLIETLRQSP REISKNDLDG ACGLLRSMKE AGFKLDWLEK KLNEVLEKKE KEESYETRMR EIEEEMKDLK AKALDVGAPL
301: RLDDVV
101: VFSSETMFSI GKFDEHFAGF IVNGEIKIVV EFLEIIDKLV LSKESNPPFK KTKLNNDGEV SKDLIREVPV IMESIVVNGF HVLPSQVEFV KRIFEKHPDV
201: AKEFRPTNRI VKTAYMNVLL SLIETLRQSP REISKNDLDG ACGLLRSMKE AGFKLDWLEK KLNEVLEKKE KEESYETRMR EIEEEMKDLK AKALDVGAPL
301: RLDDVV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.