Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G58360.1 | Thale cress | cytosol | 40.06 | 42.62 |
| AT3G58350.1 | Thale cress | cytosol | 39.75 | 41.86 |
| AT2G05410.2 | Thale cress | cytosol | 39.12 | 40.92 |
| AT3G58370.1 | Thale cress | cytosol | 38.8 | 40.73 |
| AT2G01790.1 | Thale cress | cytosol | 33.75 | 39.78 |
| AT1G31390.1 | Thale cress | cytosol | 33.44 | 39.55 |
| AT3G58400.1 | Thale cress | extracellular | 35.96 | 38.91 |
| AT3G44790.1 | Thale cress | cytosol | 39.43 | 38.58 |
| AT3G58210.1 | Thale cress | plastid | 40.06 | 38.48 |
| AT3G27040.1 | Thale cress | cytosol | 32.81 | 38.38 |
| AT3G44800.1 | Thale cress | cytosol | 41.01 | 38.01 |
| AT2G05420.1 | Thale cress | cytosol | 35.33 | 37.71 |
| AT3G58270.3 | Thale cress | cytosol | 40.69 | 37.61 |
| AT3G58250.1 | Thale cress | cytosol | 37.22 | 37.22 |
| AT3G58260.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 37.22 | 36.76 |
| AT1G31400.1 | Thale cress | cytosol | 32.18 | 36.69 |
| AT3G58340.1 | Thale cress | cytosol | 36.91 | 36.0 |
| AT2G05400.3 | Thale cress | cytosol | 24.61 | 35.94 |
| AT1G31380.1 | Thale cress | cytosol | 19.56 | 35.43 |
| AT3G29580.1 | Thale cress | cytosol | 34.07 | 35.29 |
| AT3G58380.1 | Thale cress | cytosol | 33.44 | 34.53 |
| AT3G58410.1 | Thale cress | cytosol | 35.65 | 34.45 |
| AT3G58200.1 | Thale cress | cytosol | 34.38 | 34.17 |
| AT1G31370.1 | Thale cress | cytosol | 19.24 | 31.61 |
| AT3G58320.1 | Thale cress | nucleus | 21.77 | 30.8 |
| AT3G44805.1 | Thale cress | cytosol | 22.4 | 28.63 |
| AT3G58220.2 | Thale cress | cytosol | 35.02 | 24.5 |
| AT3G58430.1 | Thale cress | cytosol | 34.7 | 23.35 |
| AT3G58440.1 | Thale cress | cytosol | 30.6 | 16.14 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.1 | EntrezGene:824993 | UniProt:A0A178VJY4 | ProteinID:AEE79758.1 | ArrayExpress:AT3G58240 |
| EnsemblPlantsGene:AT3G58240 | RefSeq:AT3G58240 | TAIR:AT3G58240 | RefSeq:AT3G58240-TAIR-G | EnsemblPlants:AT3G58240.1 | TAIR:AT3G58240.1 |
| Unigene:At.53979 | ProteinID:CAB68162.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | RefSeq:NP_191383.1 | ProteinID:OAP05781.1 |
| PFAM:PF00917 | PFscan:PS50144 | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 | UniProt:Q9M2J2 | SUPFAM:SSF49599 |
| InterPro:TRAF-like | UniParc:UPI000009D3C9 | SEG:seg | : | : | : |
Description
MATH domain and coiled-coil domain-containing protein At3g58240 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2J2]
Coordinates
chr3:-:21568459..21569827
Molecular Weight (calculated)
36429.0 Da
IEP (calculated)
7.524
GRAVY (calculated)
-0.393
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNPVDNKFT WVIKNFCSVS PKPIYSDQFL IGGNKWHILA YSKKRDGHQF LCLDLELVDC EFLPSEWRKV VKVSFTVVNF FSKKLSRQIG LKHCFNKKER
101: SKGGSLFHLS ELTDKKSGFL VDGEVEIVAQ ITVLETDRRF HVSKDYNMEM QCWDGMATTL VENKELNDDD KAGLVNVKGF QVLPSQLGIV NRIFEKHPET
201: ALECCTKNQE LRASYINVIF SLIKLLYKGA QEHSTHDLSD AEGALAYMKN LGFKLDWLEK KLDEVKEIKK KCERVTEMEK ELHDLMNKHT NVSKLLEKEK
301: LEIKNASAPD LSFSDVI
101: SKGGSLFHLS ELTDKKSGFL VDGEVEIVAQ ITVLETDRRF HVSKDYNMEM QCWDGMATTL VENKELNDDD KAGLVNVKGF QVLPSQLGIV NRIFEKHPET
201: ALECCTKNQE LRASYINVIF SLIKLLYKGA QEHSTHDLSD AEGALAYMKN LGFKLDWLEK KLDEVKEIKK KCERVTEMEK ELHDLMNKHT NVSKLLEKEK
301: LEIKNASAPD LSFSDVI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.