Factsheet for AT3G58370.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71960	Canola	cytosol	30.46	63.89
Bra007388.1-P	Field mustard	cytosol	57.28	56.91
CDY06045	Canola	cytosol	56.95	56.21
CDY06047	Canola	cytosol	57.62	53.37
Bra007386.1-P	Field mustard	cytosol	57.62	53.37
AT3G58350.1	Thale cress	cytosol	51.99	52.16
AT2G05400.3	Thale cress	cytosol	37.09	51.61
AT3G58210.1	Thale cress	plastid	55.96	51.21
AT3G58360.1	Thale cress	cytosol	50.33	51.01
AT1G31380.1	Thale cress	cytosol	29.47	50.86
Bra007389.1-P	Field mustard	cytosol	53.64	50.78
AT2G05410.2	Thale cress	cytosol	50.0	49.84
AT3G44790.1	Thale cress	cytosol	53.31	49.69
AT3G58270.3	Thale cress	cytosol	56.29	49.56
AT3G58400.1	Thale cress	extracellular	48.01	49.49
AT1G31390.1	Thale cress	cytosol	43.38	48.88
AT3G58380.1	Thale cress	cytosol	49.67	48.86
AT2G01790.1	Thale cress	cytosol	43.05	48.33
AT2G05420.1	Thale cress	cytosol	46.69	47.47
AT3G58250.1	Thale cress	cytosol	49.67	47.32
AT3G27040.1	Thale cress	cytosol	41.72	46.49
AT3G58410.1	Thale cress	cytosol	50.0	46.04
AT1G31400.1	Thale cress	cytosol	42.05	45.68
AT3G58340.1	Thale cress	cytosol	49.01	45.54
AT3G58260.1	Thale cress	cytosol, golgi, mitochondrion, plastid	48.01	45.17
AT3G58200.1	Thale cress	cytosol	46.36	43.89
AT3G44800.1	Thale cress	cytosol	49.67	43.86
AT1G31370.1	Thale cress	cytosol	27.48	43.01
AT3G29580.1	Thale cress	cytosol	43.38	42.81
AT3G58320.1	Thale cress	nucleus	28.81	38.84
AT3G58240.1	Thale cress	cytosol	40.73	38.8
AT3G44805.1	Thale cress	cytosol	28.48	34.68
Bra007387.1-P	Field mustard	cytosol	53.31	34.18
AT3G58220.2	Thale cress	cytosol	45.7	30.46
CDY06046	Canola	cytosol	54.97	28.77
AT3G58430.1	Thale cress	cytosol	42.38	27.18
AT3G58440.1	Thale cress	cytosol	39.74	19.97

Protein Annotations

Gene3D:2.60.210.10	MapMan:35.1	ArrayExpress:AT3G58370	EnsemblPlantsGene:AT3G58370	RefSeq:AT3G58370	TAIR:AT3G58370
RefSeq:AT3G58370-TAIR-G	EnsemblPlants:AT3G58370.1	TAIR:AT3G58370.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	PFAM:PF00917
PFscan:PS50144	PANTHER:PTHR24007	PANTHER:PTHR24007:SF12	SMART:SM00061	SUPFAM:SSF49599	InterPro:TRAF-like
UniParc:UPI00045BE15D	SEG:seg	:	:	:	:

Description

TRAF-like family protein [Source:TAIR;Acc:AT3G58370]

Coordinates

chr3:-:21595774..21597116

Molecular Weight (calculated)

34293.0 Da

IEP (calculated)

5.823

GRAVY (calculated)

-0.390

Length

302 amino acids

Sequence
(BLAST)

001: MESEEVDNKF TWVIKNFSTL QYDKIYSDPF VIGGCKWHLL AYPKGNKFNN SLSLYLVVDD ARALPCGWRR YAQFSLTIIN QLTDKLSQRG GTEKQNWFNQ
101: RNLGSGFTSM IPLPNLHAKN AGYLVNGEVK IVVEINDLEV IGKLDVSEET SPVKESIDVN GFQVLPSQVE SVKCIFERHP DFASKFRPKN RHLKSTYMTV
201: LLGLIKTLCQ LPEELTDDDL DEASVAVSYV ENGGLRLDWL EKKLAEVKAK KKKVETGKAR LQRAEEELQK LNQKCLELKA FLEKENADVS EANVPLSFED
301: VV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.