Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- nucleus 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67730 | Canola | cytosol | 67.44 | 68.35 |
| AT3G58360.1 | Thale cress | cytosol | 63.79 | 64.43 |
| AT3G58400.1 | Thale cress | extracellular | 62.46 | 64.16 |
| AT2G05420.1 | Thale cress | cytosol | 53.16 | 53.87 |
| CDX98279 | Canola | cytosol | 48.17 | 53.7 |
| AT3G58370.1 | Thale cress | cytosol | 52.16 | 51.99 |
| AT3G58210.1 | Thale cress | plastid | 56.81 | 51.82 |
| AT2G05410.2 | Thale cress | cytosol | 51.83 | 51.49 |
| AT2G05400.3 | Thale cress | cytosol | 36.54 | 50.69 |
| AT1G31380.1 | Thale cress | cytosol | 29.24 | 50.29 |
| AT3G58270.3 | Thale cress | cytosol | 56.81 | 49.85 |
| AT3G58250.1 | Thale cress | cytosol | 52.16 | 49.53 |
| AT3G27040.1 | Thale cress | cytosol | 44.19 | 49.08 |
| AT1G31390.1 | Thale cress | cytosol | 43.52 | 48.88 |
| AT3G44790.1 | Thale cress | cytosol | 52.49 | 48.77 |
| AT1G31400.1 | Thale cress | cytosol | 44.52 | 48.2 |
| AT2G01790.1 | Thale cress | cytosol | 42.86 | 47.96 |
| CDX84400 | Canola | nucleus | 19.27 | 47.54 |
| AT3G58260.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 48.84 | 45.79 |
| AT3G58200.1 | Thale cress | cytosol | 48.51 | 45.77 |
| AT3G44800.1 | Thale cress | cytosol | 50.83 | 44.74 |
| AT3G29580.1 | Thale cress | cytosol | 44.52 | 43.79 |
| AT3G58410.1 | Thale cress | cytosol | 47.51 | 43.6 |
| AT3G58340.1 | Thale cress | cytosol | 46.51 | 43.08 |
| AT1G31370.1 | Thale cress | cytosol | 26.91 | 41.97 |
| Bra003330.1-P | Field mustard | cytosol | 65.12 | 40.92 |
| AT3G58320.1 | Thale cress | nucleus | 29.9 | 40.18 |
| AT3G58240.1 | Thale cress | cytosol | 41.86 | 39.75 |
| AT3G58380.1 | Thale cress | cytosol | 40.53 | 39.74 |
| AT3G44805.1 | Thale cress | cytosol | 26.58 | 32.26 |
| AT3G58220.2 | Thale cress | cytosol | 47.51 | 31.57 |
| AT3G58430.1 | Thale cress | cytosol | 43.19 | 27.6 |
| AT3G58440.1 | Thale cress | cytosol | 39.87 | 19.97 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.1 | EntrezGene:825004 | ProteinID:ADE43100.1 | ProteinID:ADE43110.1 | ProteinID:AEE79772.1 |
| ProteinID:ANM65779.1 | ArrayExpress:AT3G58350 | EnsemblPlantsGene:AT3G58350 | RefSeq:AT3G58350 | TAIR:AT3G58350 | RefSeq:AT3G58350-TAIR-G |
| EnsemblPlants:AT3G58350.1 | TAIR:AT3G58350.1 | Unigene:At.53987 | ProteinID:CAB68173.1 | ProteinID:CBW45910.1 | ProteinID:CBW45913.1 |
| ProteinID:CBW45916.1 | ProteinID:CBW45919.1 | ProteinID:CBW45932.1 | ProteinID:CBW45933.1 | ProteinID:CBW45934.1 | ncoils:Coil |
| UniProt:D5K228 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006810 | GO:GO:0006950 |
| GO:GO:0006952 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009615 | GO:GO:0009987 |
| GO:GO:0043621 | GO:GO:0046741 | GO:GO:0051607 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom |
| RefSeq:NP_001319792.1 | RefSeq:NP_567063.1 | PFAM:PF00917 | PO:PO:0000230 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009046 | PO:PO:0020100 | PO:PO:0020137 | PFscan:PS50144 | PANTHER:PTHR24007 |
| PANTHER:PTHR24007:SF12 | Symbol:RTM3 | SMART:SM00061 | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI0000163730 |
| SEG:seg | : | : | : | : | : |
Description
RTM3Protein RESTRICTED TEV MOVEMENT 3 [Source:UniProtKB/Swiss-Prot;Acc:D5K228]
Coordinates
chr3:-:21591409..21592938
Molecular Weight (calculated)
34073.9 Da
IEP (calculated)
5.302
GRAVY (calculated)
-0.394
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKQFDKKIT WTIKNFASLL SDLIYSDHFV VGGCKWHLRA YPKGYNNANS LSLFLGVAVP TSLPSGWRRH TKFRLTLVNQ LSDKLSQSKL NELEQWFDEK
101: TTNWGLSSMC PLNEIHAKDS GFLLNGELKI VVEIKVLETI GKLDVTEETS TITETVDVNG FQLLPSQAKS VSRMFAKHPE LASDLRPKNP NLRTGYMSLL
201: LSLIETLSQL PQQMSKDDLL DAYDALGSMR DAGFKLDWLE KKLYEVSEKK ENEEASETGL QEMEEELKDM KQKCLEMEAL VEKEKAKVST AKAPISFDDI
301: V
101: TTNWGLSSMC PLNEIHAKDS GFLLNGELKI VVEIKVLETI GKLDVTEETS TITETVDVNG FQLLPSQAKS VSRMFAKHPE LASDLRPKNP NLRTGYMSLL
201: LSLIETLSQL PQQMSKDDLL DAYDALGSMR DAGFKLDWLE KKLYEVSEKK ENEEASETGL QEMEEELKDM KQKCLEMEAL VEKEKAKVST AKAPISFDDI
301: V
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.