Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G58350.1 | CDX67730 | AT3G58350.1 | 20584941 |
| AT3G58350.1 | CDX84400 | AT3G58350.1 | 20584941 |
| AT3G58350.1 | CDX98279 | AT3G58350.1 | 20584941 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09631 | Canola | cytosol | 29.51 | 34.29 |
| CDX67728 | Canola | cytosol | 11.48 | 33.33 |
| CDX88982 | Canola | cytosol | 27.05 | 28.21 |
| CDX71960 | Canola | cytosol | 30.33 | 25.69 |
| CDY00561 | Canola | cytosol | 28.69 | 23.33 |
| CDX67730 | Canola | cytosol | 53.28 | 21.89 |
| CDY00567 | Canola | plastid | 34.43 | 21.11 |
| CDX88985 | Canola | extracellular | 32.79 | 20.83 |
| CDY17817 | Canola | cytosol | 30.33 | 20.79 |
| CDX67741 | Canola | cytosol | 30.33 | 20.44 |
| AT3G58350.1 | Thale cress | cytosol | 47.54 | 19.27 |
| CDX88981 | Canola | extracellular | 33.61 | 18.89 |
| AT3G58400.1 | Thale cress | extracellular | 44.26 | 18.43 |
| CDX67729 | Canola | cytosol | 37.7 | 17.16 |
| CDY00564 | Canola | cytosol | 26.23 | 16.58 |
| CDY17006 | Canola | cytosol | 35.25 | 16.48 |
| CDX98282 | Canola | cytosol | 34.43 | 16.28 |
| CDX88978 | Canola | cytosol | 35.25 | 15.69 |
| CDY52912 | Canola | cytosol | 37.7 | 15.44 |
| CDX98279 | Canola | cytosol | 33.61 | 15.19 |
| CDY00554 | Canola | cytosol | 33.61 | 14.91 |
| CDX69523 | Canola | cytosol | 34.43 | 14.89 |
| CDY53703 | Canola | cytosol | 32.79 | 14.71 |
| CDX98280 | Canola | cytosol | 34.43 | 14.63 |
| CDX67732 | Canola | cytosol | 34.43 | 14.63 |
| CDY00566 | Canola | cytosol | 34.43 | 14.48 |
| CDY23318 | Canola | cytosol | 30.33 | 13.96 |
| CDY00559 | Canola | nucleus | 22.13 | 13.78 |
| CDX88984 | Canola | cytosol | 34.43 | 13.5 |
| CDY00562 | Canola | cytosol | 26.23 | 13.45 |
| CDY06045 | Canola | cytosol | 33.61 | 13.4 |
| CDX88983 | Canola | cytosol | 29.51 | 13.0 |
| CDX71958 | Canola | cytosol | 31.97 | 12.96 |
| CDX90477 | Canola | cytosol | 28.69 | 12.87 |
| CDX98291 | Canola | cytosol | 30.33 | 12.85 |
| CDY23317 | Canola | cytosol | 27.87 | 12.5 |
| CDY06042 | Canola | cytosol | 30.33 | 12.01 |
| CDX98283 | Canola | mitochondrion | 38.52 | 11.81 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 36.89 | 10.69 |
| CDY06047 | Canola | cytosol | 27.87 | 10.43 |
| CDY06044 | Canola | cytosol | 18.85 | 9.35 |
| CDX67734 | Canola | cytosol | 32.79 | 8.75 |
| CDX98294 | Canola | plastid | 26.23 | 8.42 |
| CDX98281 | Canola | cytosol | 16.39 | 8.1 |
| CDY00558 | Canola | cytosol | 37.7 | 7.67 |
| CDX67742 | Canola | cytosol | 18.85 | 7.37 |
| CDX88980 | Canola | cytosol | 35.25 | 7.17 |
| CDX67733 | Canola | cytosol | 18.85 | 7.03 |
| CDX67743 | Canola | nucleus | 23.77 | 6.94 |
| CDX98284 | Canola | cytosol | 31.15 | 6.48 |
| CDY06046 | Canola | cytosol | 29.51 | 6.24 |
| CDX98278 | Canola | cytosol | 10.66 | 5.94 |
| CDX71959 | Canola | cytosol | 20.49 | 4.11 |
| CDY00560 | Canola | cytosol | 3.28 | 3.74 |
Protein Annotations
| EnsemblPlants:CDX84400 | EnsemblPlantsGene:GSBRNA2T00141576001 | ncoils:Coil | ProteinID:CDX84400 | ProteinID:CDX84400.1 | UniParc:UPI0004EE21CA |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC03g51000D
Coordinates
chrLK031837:+:782040..782750
Molecular Weight (calculated)
13871.4 Da
IEP (calculated)
4.875
GRAVY (calculated)
-0.666
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: MIVNGFQIPP SHSPQEVFQD DLSDAYAALG FMRDAGFKLD WLEKKLYEVS ERKKNEEAGL KEMEEDLRDL KHKCSDMEAL ANEEKESGSG FVHVGRTMEK
101: DTLSSKITLE SCALTSRLIR SR
101: DTLSSKITLE SCALTSRLIR SR
001: MGKQFDKKIT WTIKNFASLL SDLIYSDHFV VGGCKWHLRA YPKGYNNANS LSLFLGVAVP TSLPSGWRRH TKFRLTLVNQ LSDKLSQSKL NELEQWFDEK
101: TTNWGLSSMC PLNEIHAKDS GFLLNGELKI VVEIKVLETI GKLDVTEETS TITETVDVNG FQLLPSQAKS VSRMFAKHPE LASDLRPKNP NLRTGYMSLL
201: LSLIETLSQL PQQMSKDDLL DAYDALGSMR DAGFKLDWLE KKLYEVSEKK ENEEASETGL QEMEEELKDM KQKCLEMEAL VEKEKAKVST AKAPISFDDI
301: V
101: TTNWGLSSMC PLNEIHAKDS GFLLNGELKI VVEIKVLETI GKLDVTEETS TITETVDVNG FQLLPSQAKS VSRMFAKHPE LASDLRPKNP NLRTGYMSLL
201: LSLIETLSQL PQQMSKDDLL DAYDALGSMR DAGFKLDWLE KKLYEVSEKK ENEEASETGL QEMEEELKDM KQKCLEMEAL VEKEKAKVST AKAPISFDDI
301: V
Arabidopsis Description
RTM3Protein RESTRICTED TEV MOVEMENT 3 [Source:UniProtKB/Swiss-Prot;Acc:D5K228]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.