CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00561	Canola	cytosol	91.45	71.33
CDX88985	Canola	extracellular	87.18	53.12
CDX67741	Canola	cytosol	77.78	50.28
CDY00567	Canola	plastid	80.34	47.24
CDX71960	Canola	cytosol	52.99	43.06
CDX88981	Canola	extracellular	67.52	36.41
CDY09631	Canola	cytosol	29.06	32.38
CDX98291	Canola	cytosol	78.63	31.94
CDY00566	Canola	cytosol	76.92	31.03
CDY00562	Canola	cytosol	60.68	29.83
CDX88983	Canola	cytosol	67.52	28.52
CDX88984	Canola	cytosol	75.21	28.3
CDX71958	Canola	cytosol	70.94	27.57
CDY06044	Canola	cytosol	57.27	27.24
CDX84400	Canola	nucleus	28.21	27.05
CDX69523	Canola	cytosol	64.96	26.95
CDY06042	Canola	cytosol	69.23	26.3
CDX90477	Canola	cytosol	58.12	25.0
CDY00564	Canola	cytosol	41.03	24.87
CDX67729	Canola	cytosol	52.99	23.13
CDX98282	Canola	cytosol	50.43	22.87
CDY23318	Canola	cytosol	51.28	22.64
CDY17817	Canola	cytosol	34.19	22.47
CDX67730	Canola	cytosol	55.56	21.89
CDX98280	Canola	cytosol	52.14	21.25
CDX67732	Canola	cytosol	52.14	21.25
CDY06045	Canola	cytosol	54.7	20.91
CDY52912	Canola	cytosol	52.99	20.81
CDX67742	Canola	cytosol	53.85	20.19
CDY06043	Canola	cytosol, golgi, mitochondrion, peroxisome	70.94	19.71
CDY53703	Canola	cytosol	45.3	19.49
CDX98281	Canola	cytosol	41.03	19.43
CDX98279	Canola	cytosol	44.44	19.26
CDY23317	Canola	cytosol	43.59	18.75
CDX88978	Canola	cytosol	43.59	18.61
CDY00554	Canola	cytosol	43.59	18.55
CDY06047	Canola	cytosol	51.28	18.4
CDX98278	Canola	cytosol	34.19	18.26
CDY00560	Canola	cytosol	16.24	17.76
CDY17006	Canola	cytosol	38.46	17.24
CDX67733	Canola	cytosol	45.3	16.21
CDX67734	Canola	cytosol	57.27	14.66
CDY00559	Canola	nucleus	22.22	13.27
CDX67743	Canola	nucleus	46.15	12.92
CDX98283	Canola	mitochondrion	43.59	12.81
CDX98294	Canola	plastid	39.32	12.11
CDX67728	Canola	cytosol	4.27	11.9
CDX71959	Canola	cytosol	59.83	11.49
CDX98284	Canola	cytosol	57.27	11.43
CDX88980	Canola	cytosol	55.56	10.83
CDY06046	Canola	cytosol	52.99	10.75
CDY00558	Canola	cytosol	53.85	10.5

Protein Annotations

EnsemblPlants:CDX88982	EnsemblPlantsGene:GSBRNA2T00149094001	ncoils:Coil	PANTHER:PTHR24007	PANTHER:PTHR24007:SF12	ProteinID:CDX88982
ProteinID:CDX88982.1	SEG:seg	UniParc:UPI0004EF236C	MapMan:35.1	:	:

Description

BnaA04g02040D

Coordinates

chrLK031857:-:374169..379126

Molecular Weight (calculated)

13567.5 Da

IEP (calculated)

4.658

GRAVY (calculated)

-0.230

Length

117 amino acids

Sequence
(BLAST)

001: MDVNGFQVLT SQVEPVRLIF KIHPDIAVEF RAKNQHLRNA CMDFLLSLID TLCQSLEDLS NEDLVEADIA LTYLKDAGFK VDWLEKKLDI VKDKKEKEQS
101: SLARLQEMED FLLKLKQ

Best Arabidopsis Sequence Match ( AT3G58410.1 )
(BLAST)

001: MNLLFFLQVL QFDQEESFTT SMTKQVGKKF AWVIKNFSSL QCKKFYSVPF QIGDCKWRLS IYPKGNNCDY LSLFLEVADF KSLPSGWRRY VKLRLYIVKQ
101: EMWGWGFLYM LPLTKLHDEK EGFLVNGELM IVAEVDALGF IDPLNESEES EDPTQPLKKI KLNDDGAVSS DLLEEASPRK ESMEVNGFQV LPSQVESVRL
201: IFERHPDIAS EFRAKNQYLR KACMDFLLSL VETLCQSLQE FSNEDLVEAD IALTYLKDAG FKVDWLEKKL DQVRDKKEKE RSCLAKLQET EETLLKLKQK
301: CTELDALMDT EKAELSAIRT PLSFEDVV

Arabidopsis Description

TRAF-like family protein [Source:TAIR;Acc:AT3G58410]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.