CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, golgi, cytosol

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88982	Canola	cytosol	19.71	70.94
CDY00561	Canola	cytosol	20.67	58.0
CDX67741	Canola	cytosol	23.75	55.25
CDX88985	Canola	extracellular	24.7	54.17
CDY00567	Canola	plastid	23.75	50.25
CDX71960	Canola	cytosol	16.39	47.92
CDX88983	Canola	cytosol	30.17	45.85
CDX98291	Canola	cytosol	30.17	44.1
CDX88981	Canola	extracellular	22.57	43.78
CDX67729	Canola	cytosol	27.08	42.54
CDY00562	Canola	cytosol	23.52	41.6
CDX67728	Canola	cytosol	4.04	40.48
CDY06044	Canola	cytosol	23.52	40.24
CDX67730	Canola	cytosol	28.27	40.07
CDX71958	Canola	cytosol	28.5	39.87
CDX69523	Canola	cytosol	26.37	39.36
CDY09631	Canola	cytosol	9.74	39.05
CDY06042	Canola	cytosol	28.5	38.96
CDX98282	Canola	cytosol	23.75	38.76
CDX67732	Canola	cytosol	26.37	38.68
CDX98280	Canola	cytosol	25.89	37.98
CDX88984	Canola	cytosol	27.55	37.3
CDX90477	Canola	cytosol	23.99	37.13
CDY52912	Canola	cytosol	26.13	36.91
CDY00566	Canola	cytosol	25.42	36.9
CDX84400	Canola	nucleus	10.69	36.89
CDY23318	Canola	cytosol	22.8	36.23
CDY17006	Canola	cytosol	22.33	36.02
CDY00564	Canola	cytosol	16.39	35.75
CDY06045	Canola	cytosol	25.42	34.97
CDY53703	Canola	cytosol	21.85	33.82
CDX98278	Canola	cytosol	17.34	33.33
CDX98279	Canola	cytosol	20.9	32.59
CDY06047	Canola	cytosol	25.18	32.52
CDY00554	Canola	cytosol	21.14	32.36
CDY23317	Canola	cytosol	20.9	32.35
CDY17817	Canola	cytosol	13.54	32.02
CDX98281	Canola	cytosol	18.76	31.98
CDX67742	Canola	cytosol	23.28	31.41
CDX88978	Canola	cytosol	20.43	31.39
CDX67733	Canola	cytosol	23.04	29.66
CDX98283	Canola	mitochondrion	25.18	26.63
CDY00560	Canola	cytosol	5.94	23.36
CDX67734	Canola	cytosol	22.8	21.01
CDX67743	Canola	nucleus	20.19	20.33
CDX88980	Canola	cytosol	26.37	18.5
CDX98294	Canola	plastid	16.63	18.42
CDY06046	Canola	cytosol	25.18	18.37
CDX98284	Canola	cytosol	25.42	18.26
CDY00558	Canola	cytosol	25.89	18.17
CDX71959	Canola	cytosol	24.94	17.24
CDY00559	Canola	nucleus	7.84	16.84

Protein Annotations

EnsemblPlants:CDY06043	EnsemblPlantsGene:GSBRNA2T00121897001	Gene3D:2.60.210.10	GO:A0A078F2R5	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	ncoils:Coil
PANTHER:PTHR24007	PANTHER:PTHR24007:SF12	PFscan:PS50144	ProteinID:CDY06043	ProteinID:CDY06043.1	SUPFAM:SSF49599
TMHMM:TMhelix	UniParc:UPI0004EDB499	MapMan:35.1	:	:	:

Description

BnaA09g37370D

Coordinates

chrLK031967:+:435029..438061

Molecular Weight (calculated)

49059.0 Da

IEP (calculated)

7.736

GRAVY (calculated)

-0.364

Length

421 amino acids

Sequence
(BLAST)

001: MKKIGENKFT WVIKNFSSLQ HETFHDYAFE IDTDVCSCRL SVTPHGKKPH QFLGWRMLIA YNPSLLPGRT RHFSYRLTVV NQLSEKPSFI QEGPHWFDSE
101: TMEWGFSRFL QRLMFWNLLT SYIYQGNSRR QPYLRQPSAI RERIQVNGFQ VLPSQVETVR SIFERHPDIA VGFHSKNQHL RKACMNSLLC LIETLCQSLQ
201: ELSSEDLVQA SVALTYLKDS GFKLDWLEKK LDQVEVKKEK EMSCLAILQE TEESLLNLKQ KCSELKAELT ETKTPLSFDD SGFLDPQVTM SREHKRIMLL
301: LQRAEDKLNR AVHNIAKSEK YFLDSAAEYG NRASNLELCL DESGVSYYLQ MKEECQEAAK KYAAMRHFAL QQQLAKIDDL RTIAWEAYEE KAFTTSQTFM
401: LFLLGLTCIF SVLAFFLQKL R

Best Arabidopsis Sequence Match ( AT3G58340.1 )
(BLAST)

001: MAKAVDKKFC WEIKNFSSLN SERCHSVPVV IGDCKWRLVA FPKGYKADYL SLYLEVADFK SLPSGWRRYV KFRACIVNQL SQELSVQQET QRWFDQNAPG
101: WGFENMLLLT ELNAKDGGFL VNGQVMIVAE VEFLEVIGTL DESEEIIKSS DLINKTQEVA QQVKEIIQPN DLINKTQEVA QQVKESIDVN GFQVLPSQVE
201: SVRRIFKKHP DIAVGFQVKN QHLRKTFMNF LVNVIETMCQ SLQELSNEDL VEVDIALTYL KDAGFKVDWL EKKLDHVKEK KEKEQSGLII LQGIEQQLHE
301: LMHKCEKKKS EVLSVGAPLK FDDVV

Arabidopsis Description

MATH domain and coiled-coil domain-containing protein At3g58340 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2I2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.