Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00566 | Canola | cytosol | 75.24 | 80.69 |
| CDX88982 | Canola | cytosol | 28.3 | 75.21 |
| Bra014572.1-P | Field mustard | cytosol | 96.46 | 66.96 |
| CDY00561 | Canola | cytosol | 31.19 | 64.67 |
| CDX88985 | Canola | extracellular | 39.55 | 64.06 |
| CDX67741 | Canola | cytosol | 34.73 | 59.67 |
| CDY00567 | Canola | plastid | 36.33 | 56.78 |
| AT3G58410.1 | Thale cress | cytosol | 59.81 | 56.71 |
| CDX71958 | Canola | cytosol | 52.41 | 54.15 |
| CDX98291 | Canola | cytosol | 48.55 | 52.43 |
| CDY06042 | Canola | cytosol | 50.8 | 51.3 |
| CDY06044 | Canola | cytosol | 39.87 | 50.41 |
| CDX88981 | Canola | extracellular | 35.05 | 50.23 |
| CDX67728 | Canola | cytosol | 6.75 | 50.0 |
| CDX69523 | Canola | cytosol | 43.73 | 48.23 |
| CDX71960 | Canola | cytosol | 22.19 | 47.92 |
| CDY00562 | Canola | cytosol | 36.66 | 47.9 |
| CDX98281 | Canola | cytosol | 37.3 | 46.96 |
| CDX67742 | Canola | cytosol | 46.95 | 46.79 |
| CDY52912 | Canola | cytosol | 43.73 | 45.64 |
| CDX67730 | Canola | cytosol | 43.09 | 45.12 |
| CDX67732 | Canola | cytosol | 40.84 | 44.25 |
| CDY06045 | Canola | cytosol | 43.09 | 43.79 |
| CDX67729 | Canola | cytosol | 36.98 | 42.91 |
| CDX98280 | Canola | cytosol | 39.55 | 42.86 |
| CDY09631 | Canola | cytosol | 14.47 | 42.86 |
| CDY00564 | Canola | cytosol | 26.05 | 41.97 |
| CDX88983 | Canola | cytosol | 36.98 | 41.52 |
| CDX90477 | Canola | cytosol | 36.01 | 41.18 |
| CDX98278 | Canola | cytosol | 28.94 | 41.1 |
| CDY17006 | Canola | cytosol | 34.41 | 41.0 |
| CDY53703 | Canola | cytosol | 35.05 | 40.07 |
| CDY23318 | Canola | cytosol | 34.08 | 40.0 |
| CDY06047 | Canola | cytosol | 41.16 | 39.26 |
| CDX88978 | Canola | cytosol | 34.41 | 39.05 |
| CDY23317 | Canola | cytosol | 34.08 | 38.97 |
| CDY00554 | Canola | cytosol | 34.41 | 38.91 |
| CDY00560 | Canola | cytosol | 13.18 | 38.32 |
| CDX98279 | Canola | cytosol | 32.48 | 37.41 |
| CDX98282 | Canola | cytosol | 28.62 | 34.5 |
| CDX84400 | Canola | nucleus | 13.5 | 34.43 |
| CDX67733 | Canola | cytosol | 33.12 | 31.5 |
| CDY17817 | Canola | cytosol | 17.68 | 30.9 |
| CDX98283 | Canola | mitochondrion | 37.94 | 29.65 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 37.3 | 27.55 |
| CDX67734 | Canola | cytosol | 36.33 | 24.73 |
| CDX88980 | Canola | cytosol | 44.69 | 23.17 |
| CDY00558 | Canola | cytosol | 44.69 | 23.17 |
| CDX98294 | Canola | plastid | 28.3 | 23.16 |
| CDY06046 | Canola | cytosol | 42.12 | 22.7 |
| CDX67743 | Canola | nucleus | 29.9 | 22.25 |
| CDX98284 | Canola | cytosol | 38.59 | 20.48 |
| CDX71959 | Canola | cytosol | 39.55 | 20.2 |
| CDY00559 | Canola | nucleus | 11.58 | 18.37 |
Protein Annotations
| EnsemblPlants:CDX88984 | EnsemblPlantsGene:GSBRNA2T00149096001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR24007 |
| PANTHER:PTHR24007:SF12 | PFscan:PS50144 | ProteinID:CDX88984 | ProteinID:CDX88984.1 | SEG:seg | SUPFAM:SSF49599 |
| UniParc:UPI0004EE6717 | MapMan:35.1 | : | : | : | : |
Description
BnaA04g02020D
Coordinates
chrLK031857:-:382047..384300
Molecular Weight (calculated)
35585.7 Da
IEP (calculated)
5.018
GRAVY (calculated)
-0.331
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMQVGKKFS WVIKDFPSLQ CKICHSAPVL IGDCKWFLHA YPKGNKVDYL KYVKFRLSIV KQNLKSDTEL QETHCWFDEE ARCWGFQSMI PLTKLHDEKE
101: GCLVDGDLVI VAEVDVLEVI GNLDESEESE ESCRPVKKSK HGGGEESIDS LKEAHLGKET MDVNGFHVLV SQGESVKRIF EMHPDIAVEF RAKNQHLRNA
201: CMSFLLSLTE TLCVSLQELS NEDLVEADVA LTYVRDAGFK VNWLEKKLET VKEKKEKEKC SLIRLEEMKD SLLKLKQKCS DLEALVEKEE AQLSAIRSPS
301: SFDDILFDWL Y
101: GCLVDGDLVI VAEVDVLEVI GNLDESEESE ESCRPVKKSK HGGGEESIDS LKEAHLGKET MDVNGFHVLV SQGESVKRIF EMHPDIAVEF RAKNQHLRNA
201: CMSFLLSLTE TLCVSLQELS NEDLVEADVA LTYVRDAGFK VNWLEKKLET VKEKKEKEKC SLIRLEEMKD SLLKLKQKCS DLEALVEKEE AQLSAIRSPS
301: SFDDILFDWL Y
001: MTKQVGKKFA WVIKNFSSLQ CKKFYSVPFQ IGDCKWRLSI YPKGNNCDYL SLFLEVADFK SLPSGWRRYV KLRLYIVKQL STLIRKTHRW FDQEMWGWGF
101: LYMLPLTKLH DEKEGFLVNG ELMIVAEVDA LGFIDPLNES EESEDPTQPL KKIKLNDDGA VSSDLLEEAS PRKESMEVNG FQVLPSQVES VRLIFERHPD
201: IASEFRAKNQ YLRKACMDFL LSLVETLCQS LQEFSNEDLV EADIALTYLK DAGFKVDWLE KKLDQVRDKK EKERSCLAKL QETEETLLKL KQKCTELDAL
301: MDTEKAELSA IRTPLSFEDV V
101: LYMLPLTKLH DEKEGFLVNG ELMIVAEVDA LGFIDPLNES EESEDPTQPL KKIKLNDDGA VSSDLLEEAS PRKESMEVNG FQVLPSQVES VRLIFERHPD
201: IASEFRAKNQ YLRKACMDFL LSLVETLCQS LQEFSNEDLV EADIALTYLK DAGFKVDWLE KKLDQVRDKK EKERSCLAKL QETEETLLKL KQKCTELDAL
301: MDTEKAELSA IRTPLSFEDV V
Arabidopsis Description
TRAF-like family protein [Source:TAIR;Acc:AT3G58410]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.