Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G58350.1 | CDX67730 | AT3G58350.1 | 20584941 |
| AT3G58350.1 | CDX84400 | AT3G58350.1 | 20584941 |
| AT3G58350.1 | CDX98279 | AT3G58350.1 | 20584941 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G58350.1 | Thale cress | cytosol | 68.35 | 67.44 |
| CDX98279 | Canola | cytosol | 60.61 | 66.67 |
| CDX67732 | Canola | cytosol | 56.9 | 58.88 |
| CDX98280 | Canola | cytosol | 56.57 | 58.54 |
| CDY52912 | Canola | cytosol | 58.59 | 58.39 |
| AT3G58400.1 | Thale cress | extracellular | 57.58 | 58.36 |
| CDX67728 | Canola | cytosol | 8.08 | 57.14 |
| CDY17006 | Canola | cytosol | 50.17 | 57.09 |
| CDX88982 | Canola | cytosol | 21.89 | 55.56 |
| CDX84400 | Canola | nucleus | 21.89 | 53.28 |
| CDX67729 | Canola | cytosol | 47.14 | 52.24 |
| CDX88985 | Canola | extracellular | 32.66 | 50.52 |
| CDX71960 | Canola | cytosol | 23.57 | 48.61 |
| CDY23318 | Canola | cytosol | 43.1 | 48.3 |
| CDY53703 | Canola | cytosol | 44.11 | 48.16 |
| CDX98278 | Canola | cytosol | 35.35 | 47.95 |
| CDX69523 | Canola | cytosol | 45.45 | 47.87 |
| Bra003330.1-P | Field mustard | cytosol | 76.77 | 47.6 |
| CDY00561 | Canola | cytosol | 23.91 | 47.33 |
| CDY23317 | Canola | cytosol | 43.1 | 47.06 |
| CDX88978 | Canola | cytosol | 43.1 | 46.72 |
| CDY00554 | Canola | cytosol | 43.1 | 46.55 |
| CDX67741 | Canola | cytosol | 28.28 | 46.41 |
| CDY06045 | Canola | cytosol | 47.81 | 46.41 |
| CDX88981 | Canola | extracellular | 33.67 | 46.08 |
| CDX98282 | Canola | cytosol | 39.73 | 45.74 |
| CDY06044 | Canola | cytosol | 37.71 | 45.53 |
| CDY00562 | Canola | cytosol | 36.36 | 45.38 |
| CDY00566 | Canola | cytosol | 42.76 | 43.79 |
| CDY00567 | Canola | plastid | 29.29 | 43.72 |
| CDX88983 | Canola | cytosol | 40.4 | 43.32 |
| CDX88984 | Canola | cytosol | 45.12 | 43.09 |
| CDY06047 | Canola | cytosol | 47.14 | 42.94 |
| CDY00564 | Canola | cytosol | 27.61 | 42.49 |
| CDX98283 | Canola | mitochondrion | 56.9 | 42.46 |
| CDX98291 | Canola | cytosol | 40.74 | 42.01 |
| CDY09631 | Canola | cytosol | 14.81 | 41.9 |
| CDX90477 | Canola | cytosol | 38.05 | 41.54 |
| CDX71958 | Canola | cytosol | 42.09 | 41.53 |
| CDY06042 | Canola | cytosol | 42.42 | 40.91 |
| CDX98281 | Canola | cytosol | 33.33 | 40.08 |
| CDX67733 | Canola | cytosol | 43.43 | 39.45 |
| CDY00560 | Canola | cytosol | 13.13 | 36.45 |
| CDX67742 | Canola | cytosol | 38.05 | 36.22 |
| CDY17817 | Canola | cytosol | 21.55 | 35.96 |
| CDY00558 | Canola | cytosol | 58.25 | 28.83 |
| CDX88980 | Canola | cytosol | 57.58 | 28.5 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 40.07 | 28.27 |
| CDX67743 | Canola | nucleus | 38.38 | 27.27 |
| CDX67734 | Canola | cytosol | 41.08 | 26.7 |
| CDX98294 | Canola | plastid | 32.32 | 25.26 |
| CDY06046 | Canola | cytosol | 44.78 | 23.05 |
| CDX98284 | Canola | cytosol | 45.12 | 22.87 |
| CDX71959 | Canola | cytosol | 38.72 | 18.88 |
| CDY00559 | Canola | nucleus | 11.78 | 17.86 |
Protein Annotations
| EnsemblPlants:CDX67730 | EnsemblPlantsGene:GSBRNA2T00098917001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR24007 |
| PANTHER:PTHR24007:SF12 | PFAM:PF00917 | PFscan:PS50144 | ProteinID:CDX67730 | ProteinID:CDX67730.1 | SEG:seg |
| SMART:SM00061 | SUPFAM:SSF49599 | UniParc:UPI0004EE5429 | MapMan:35.1 | : | : |
Description
BnaA07g17700D
Coordinates
chrLK031787:-:2006337..2008243
Molecular Weight (calculated)
33951.6 Da
IEP (calculated)
5.734
GRAVY (calculated)
-0.458
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKQFNKKIT WVIKNFSSLK SEKFCSDRFV ADGCKWYLSA YPKGSNDHLS LFLEVDNSGL LPIGWRRHTK FSFTVLNQRS KKLSRKHELQ QWFEQMTPGW
101: GPPSMLPLNE LHAKDSGFLV NGDLKIVVEI DVLEVIGKLD VTEETSTIIE TMDVNGFQIL PSHAEYVSRM FERHSELASE FRPKNPNLRT AYISFLLSVI
201: ETMCQSPQEL SQDDLTDAYA AMGFMSDAGF KLDWLEKKLD EVSEKKKNEK SSEAGLQEME EDLRDLKRKC SDMEAVVQKE KVKMSAAKAP LSFDDVV
101: GPPSMLPLNE LHAKDSGFLV NGDLKIVVEI DVLEVIGKLD VTEETSTIIE TMDVNGFQIL PSHAEYVSRM FERHSELASE FRPKNPNLRT AYISFLLSVI
201: ETMCQSPQEL SQDDLTDAYA AMGFMSDAGF KLDWLEKKLD EVSEKKKNEK SSEAGLQEME EDLRDLKRKC SDMEAVVQKE KVKMSAAKAP LSFDDVV
001: MGKQFDKKIT WTIKNFASLL SDLIYSDHFV VGGCKWHLRA YPKGYNNANS LSLFLGVAVP TSLPSGWRRH TKFRLTLVNQ LSDKLSQSKL NELEQWFDEK
101: TTNWGLSSMC PLNEIHAKDS GFLLNGELKI VVEIKVLETI GKLDVTEETS TITETVDVNG FQLLPSQAKS VSRMFAKHPE LASDLRPKNP NLRTGYMSLL
201: LSLIETLSQL PQQMSKDDLL DAYDALGSMR DAGFKLDWLE KKLYEVSEKK ENEEASETGL QEMEEELKDM KQKCLEMEAL VEKEKAKVST AKAPISFDDI
301: V
101: TTNWGLSSMC PLNEIHAKDS GFLLNGELKI VVEIKVLETI GKLDVTEETS TITETVDVNG FQLLPSQAKS VSRMFAKHPE LASDLRPKNP NLRTGYMSLL
201: LSLIETLSQL PQQMSKDDLL DAYDALGSMR DAGFKLDWLE KKLYEVSEKK ENEEASETGL QEMEEELKDM KQKCLEMEAL VEKEKAKVST AKAPISFDDI
301: V
Arabidopsis Description
RTM3Protein RESTRICTED TEV MOVEMENT 3 [Source:UniProtKB/Swiss-Prot;Acc:D5K228]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.