Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014577.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY00554 | Canola | cytosol | 93.43 | 93.09 |
| CDX67728 | Canola | cytosol | 8.39 | 54.76 |
| AT3G58260.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 55.84 | 47.66 |
| CDX98280 | Canola | cytosol | 47.08 | 44.95 |
| CDX67729 | Canola | cytosol | 43.43 | 44.4 |
| CDY23318 | Canola | cytosol | 42.34 | 43.77 |
| CDX88982 | Canola | cytosol | 18.61 | 43.59 |
| CDY52912 | Canola | cytosol | 47.08 | 43.29 |
| CDX67732 | Canola | cytosol | 45.26 | 43.21 |
| CDX67730 | Canola | cytosol | 46.72 | 43.1 |
| CDX71960 | Canola | cytosol | 21.53 | 40.97 |
| CDY09631 | Canola | cytosol | 15.69 | 40.95 |
| CDY23317 | Canola | cytosol | 40.51 | 40.81 |
| CDY53703 | Canola | cytosol | 40.15 | 40.44 |
| CDY06045 | Canola | cytosol | 44.89 | 40.2 |
| CDX69523 | Canola | cytosol | 41.24 | 40.07 |
| CDX88985 | Canola | extracellular | 27.37 | 39.06 |
| CDY06044 | Canola | cytosol | 34.67 | 38.62 |
| CDY06047 | Canola | cytosol | 45.62 | 38.34 |
| CDX67741 | Canola | cytosol | 25.18 | 38.12 |
| CDY17006 | Canola | cytosol | 36.13 | 37.93 |
| CDX98281 | Canola | cytosol | 33.94 | 37.65 |
| CDY00562 | Canola | cytosol | 32.48 | 37.4 |
| CDY00566 | Canola | cytosol | 39.05 | 36.9 |
| CDX88981 | Canola | extracellular | 29.2 | 36.87 |
| CDX98282 | Canola | cytosol | 34.67 | 36.82 |
| CDX90477 | Canola | cytosol | 36.5 | 36.76 |
| CDX98278 | Canola | cytosol | 29.2 | 36.53 |
| CDY06042 | Canola | cytosol | 40.51 | 36.04 |
| CDY00561 | Canola | cytosol | 19.71 | 36.0 |
| CDX98291 | Canola | cytosol | 37.59 | 35.76 |
| CDY00564 | Canola | cytosol | 25.18 | 35.75 |
| CDX84400 | Canola | nucleus | 15.69 | 35.25 |
| CDY00567 | Canola | plastid | 25.18 | 34.67 |
| CDX71958 | Canola | cytosol | 37.96 | 34.55 |
| CDX88984 | Canola | cytosol | 39.05 | 34.41 |
| CDX88983 | Canola | cytosol | 33.94 | 33.57 |
| CDX98283 | Canola | mitochondrion | 46.35 | 31.91 |
| CDY17817 | Canola | cytosol | 20.44 | 31.46 |
| CDX67733 | Canola | cytosol | 37.23 | 31.19 |
| CDX98279 | Canola | cytosol | 30.66 | 31.11 |
| CDX67742 | Canola | cytosol | 35.4 | 31.09 |
| CDY00560 | Canola | cytosol | 11.68 | 29.91 |
| CDX67734 | Canola | cytosol | 37.96 | 22.76 |
| CDX98294 | Canola | plastid | 31.39 | 22.63 |
| CDX88980 | Canola | cytosol | 49.27 | 22.5 |
| CDX67743 | Canola | nucleus | 34.31 | 22.49 |
| CDY00558 | Canola | cytosol | 48.91 | 22.33 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 31.39 | 20.43 |
| CDY06046 | Canola | cytosol | 42.7 | 20.28 |
| CDX98284 | Canola | cytosol | 43.07 | 20.14 |
| CDY00559 | Canola | nucleus | 12.41 | 17.35 |
| CDX71959 | Canola | cytosol | 33.94 | 15.27 |
Protein Annotations
| EnsemblPlants:CDX88978 | EnsemblPlantsGene:GSBRNA2T00149089001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR24007 |
| PANTHER:PTHR24007:SF12 | PFscan:PS50144 | ProteinID:CDX88978 | ProteinID:CDX88978.1 | SEG:seg | SUPFAM:SSF49599 |
| UniParc:UPI00025441D2 | MapMan:35.1 | : | : | : | : |
Description
BnaA04g02080D
Coordinates
chrLK031857:-:355174..356345
Molecular Weight (calculated)
31190.0 Da
IEP (calculated)
9.628
GRAVY (calculated)
-0.215
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSQVDSKFT WVIKNLAPFG SQIIYSDSFV ISGCKWRLIA YPKSKLLNYL TLEVADSESF PIGWRRLANF SVTILNKALK QIYRRQVTQQ WFDHKTPRLS
101: FPLMKTTLGF LVDEEVKIVA EIDVEVIING FEVLPSQVKS VNRLFKRQPD IASKFPINNP LLKTSYMNVL LSLTRALHLS PQKISNGDLS DTETTLAHMK
201: SIGFKLDWLE KKLGEIKEKK AKEKAGKIKI QNTEEKLKDL KQKCLDLEAQ LETEKAEVLA ASAPLLLSDD EDVF
101: FPLMKTTLGF LVDEEVKIVA EIDVEVIING FEVLPSQVKS VNRLFKRQPD IASKFPINNP LLKTSYMNVL LSLTRALHLS PQKISNGDLS DTETTLAHMK
201: SIGFKLDWLE KKLGEIKEKK AKEKAGKIKI QNTEEKLKDL KQKCLDLEAQ LETEKAEVLA ASAPLLLSDD EDVF
001: METTVDTTIT WVIKNFSSLQ SAPIYSDIFV VGGCKWRIMA YPKGINKAHD SFSLFLNVPD NESLPTGWRR HAKVSFSLVN QGSEKLSQRK VTQHWFVQKA
101: FTWGFPVMIT HTELNAKMGF LVNGELKVVA KIEVLEVVGK LDVSKESSPI MKTIDVNGFQ VLPSQVDSVK RLFEKNLDIV SKFRLKNPYL KTACMNLLLS
201: LTETLCQSPQ ELSNDGLSDA GVALAYLIET GLKLDWLEKK LDELKEKKKK EESCLVRLRE MDEQLQPFKK RCLDIEDQIS KEKEELLAAR EPLSLYDDID
301: NNV
101: FTWGFPVMIT HTELNAKMGF LVNGELKVVA KIEVLEVVGK LDVSKESSPI MKTIDVNGFQ VLPSQVDSVK RLFEKNLDIV SKFRLKNPYL KTACMNLLLS
201: LTETLCQSPQ ELSNDGLSDA GVALAYLIET GLKLDWLEKK LDELKEKKKK EESCLVRLRE MDEQLQPFKK RCLDIEDQIS KEKEELLAAR EPLSLYDDID
301: NNV
Arabidopsis Description
MATH domain and coiled-coil domain-containing protein At2g05410 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHT3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.