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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 3
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, secretory
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:secretory
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX88982 Canola cytosol 20.19 53.85
CDX98281 Canola cytosol 38.46 48.58
CDY06044 Canola cytosol 37.82 47.97
CDX88984 Canola cytosol 46.79 46.95
AT3G58410.1 Thale cress cytosol 49.04 46.65
CDY00566 Canola cytosol 41.99 45.17
CDX71958 Canola cytosol 43.27 44.85
CDY00561 Canola cytosol 21.47 44.67
CDY06042 Canola cytosol 43.91 44.48
CDX88985 Canola extracellular 26.28 42.71
CDX98278 Canola cytosol 29.49 42.01
CDY53703 Canola cytosol 36.54 41.91
CDY00562 Canola cytosol 31.73 41.6
CDY23318 Canola cytosol 35.26 41.51
CDY23317 Canola cytosol 35.26 40.44
CDX67729 Canola cytosol 34.29 39.93
CDX98291 Canola cytosol 36.22 39.24
CDY06045 Canola cytosol 38.46 39.22
CDX90477 Canola cytosol 33.65 38.6
CDX67741 Canola cytosol 22.12 38.12
CDX67730 Canola cytosol 36.22 38.05
CDX69523 Canola cytosol 33.97 37.59
CDX88983 Canola cytosol 33.33 37.55
CDY52912 Canola cytosol 35.58 37.25
CDX98280 Canola cytosol 33.33 36.24
CDX67732 Canola cytosol 33.33 36.24
CDY00567 Canola plastid 23.08 36.18
CDX88981 Canola extracellular 24.68 35.48
CDX71960 Canola cytosol 16.35 35.42
CDX88978 Canola cytosol 31.09 35.4
CDY06047 Canola cytosol 36.86 35.28
CDY00554 Canola cytosol 30.77 34.91
CDY17006 Canola cytosol 28.53 34.1
CDX67733 Canola cytosol 35.58 33.95
CDX98279 Canola cytosol 28.53 32.96
CDY00560 Canola cytosol 11.22 32.71
CDX98282 Canola cytosol 26.6 32.17
CDY09631 Canola cytosol 9.62 28.57
CDY00564 Canola cytosol 17.31 27.98
CDX98283 Canola mitochondrion 33.65 26.38
CDX67743 Canola nucleus 33.65 25.12
CDY06043 Canola cytosol, golgi, mitochondrion, peroxisome 31.41 23.28
CDX98294 Canola plastid 28.21 23.16
CDX67734 Canola cytosol 31.73 21.66
CDY06046 Canola cytosol 38.78 20.97
CDX71959 Canola cytosol 40.06 20.53
CDX98284 Canola cytosol 37.82 20.14
CDY17817 Canola cytosol 11.22 19.66
CDX88980 Canola cytosol 36.54 19.0
CDX84400 Canola nucleus 7.37 18.85
CDY00558 Canola cytosol 35.9 18.67
CDX67728 Canola cytosol 1.6 11.9
CDY00559 Canola nucleus 5.45 8.67
Protein Annotations
EnsemblPlants:CDX67742EnsemblPlantsGene:GSBRNA2T00098930001Gene3D:2.60.210.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002083InterPro:IPR008974InterPro:MATH/TRAF_domInterPro:TRAF-likencoils:CoilPANTHER:PTHR24007
PANTHER:PTHR24007:SF12PFAM:PF00917PFscan:PS50144ProteinID:CDX67742ProteinID:CDX67742.1SEG:seg
SMART:SM00061SUPFAM:SSF49599UniParc:UPI0004EEFA56MapMan:35.1::
Description
BnaA07g17820D
Coordinates
chrLK031787:-:2058293..2059591
Molecular Weight (calculated)
35488.6 Da
IEP (calculated)
5.035
GRAVY (calculated)
-0.204
Length
312 amino acids
Sequence
(BLAST)
001: MGTQVGKKFA WVIKNFSSLE CKICYSAPVL IGDRKWRLYA YPKGDNCDYL SLYLEVVDWK SLPSGWRRFV KLRLSVVKQS YDIDSVMKET HRWFDKKISC
101: WGFPLIPLTK LHDEREGFLE DGDLIVVAEV DVLEVVGTSD EPGESKDGSS NLKIITGDDV ASFGTGNMDI NGFQVLPSQV ESVSRIFERH PYIAVRFRAM
201: NQHTRETCMN IFLRLIEMLC QSLDELSSND ILGADTALAY LKSVHFNVAW LEKKLDLVKG NKGKEQSSLV RLQEMEDNLL ELKQKCSDLD ALVEKEEAEL
301: SAIRTPLSFD VV
Best Arabidopsis Sequence Match ( AT3G58410.2 )
(BLAST)
001: MTKQVGKKFA WVIKNFSSLQ CKKFYSVPFQ IGDCKWRLSI YPKGNNCDYL SLFLEVADFK SLPSGWRRYV KLRLYIVKQL STLIRKTHRW FDQEMWGWGF
101: LYMLPLTKLH DEKEGFLVNG ELMIVAEVDA LGFIDPLNES EESEDPTQPL KKIKLNDDGA VSSDLLEEAS PRKESMEVNG FQVLPSQVES VRLIFERHPD
201: IASEFRAKNQ YLRKACMDFL LSLVETLCQS LQEFSNEDLV EADIALTYLK DAGFKVDWLE KKLDQVRDKK EKERSCLAKL QETEETLLKL KQKCTELDAL
301: MDTEKAELSA IRTPLSFEDV V
Arabidopsis Description
TRAF-like family protein [Source:TAIR;Acc:AT3G58410]
SUBAcon: [golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.