Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88982 | Canola | cytosol | 29.83 | 60.68 |
| CDX88983 | Canola | cytosol | 61.76 | 53.07 |
| CDY00561 | Canola | cytosol | 29.83 | 47.33 |
| CDX67741 | Canola | cytosol | 34.87 | 45.86 |
| CDX88985 | Canola | extracellular | 35.29 | 43.75 |
| CDY06044 | Canola | cytosol | 43.28 | 41.87 |
| CDY09631 | Canola | cytosol | 17.65 | 40.0 |
| CDY00567 | Canola | plastid | 33.19 | 39.7 |
| CDX69523 | Canola | cytosol | 45.8 | 38.65 |
| CDX98291 | Canola | cytosol | 45.8 | 37.85 |
| AT3G58340.1 | Thale cress | cytosol | 51.26 | 37.54 |
| CDX90477 | Canola | cytosol | 42.86 | 37.5 |
| CDX98281 | Canola | cytosol | 38.24 | 36.84 |
| CDX88984 | Canola | cytosol | 47.9 | 36.66 |
| CDX67730 | Canola | cytosol | 45.38 | 36.36 |
| CDY00566 | Canola | cytosol | 44.12 | 36.21 |
| CDX71960 | Canola | cytosol | 21.85 | 36.11 |
| CDX98280 | Canola | cytosol | 43.28 | 35.89 |
| CDX67729 | Canola | cytosol | 39.92 | 35.45 |
| CDY06042 | Canola | cytosol | 45.8 | 35.39 |
| CDY52912 | Canola | cytosol | 44.12 | 35.23 |
| CDX67732 | Canola | cytosol | 42.44 | 35.19 |
| CDY23318 | Canola | cytosol | 39.08 | 35.09 |
| CDX71958 | Canola | cytosol | 43.7 | 34.55 |
| CDX88981 | Canola | extracellular | 30.67 | 33.64 |
| CDY06045 | Canola | cytosol | 42.86 | 33.33 |
| CDY00554 | Canola | cytosol | 37.82 | 32.73 |
| CDY53703 | Canola | cytosol | 37.4 | 32.72 |
| CDX88978 | Canola | cytosol | 37.4 | 32.48 |
| CDY23317 | Canola | cytosol | 36.55 | 31.99 |
| CDX98279 | Canola | cytosol | 36.13 | 31.85 |
| CDX67742 | Canola | cytosol | 41.6 | 31.73 |
| CDX98282 | Canola | cytosol | 33.61 | 31.01 |
| CDY06047 | Canola | cytosol | 42.44 | 30.98 |
| CDX98278 | Canola | cytosol | 28.15 | 30.59 |
| CDY17006 | Canola | cytosol | 32.77 | 29.89 |
| CDX67733 | Canola | cytosol | 40.34 | 29.36 |
| CDX67728 | Canola | cytosol | 5.04 | 28.57 |
| CDY17817 | Canola | cytosol | 20.17 | 26.97 |
| CDX84400 | Canola | nucleus | 13.45 | 26.23 |
| CDX98283 | Canola | mitochondrion | 42.02 | 25.13 |
| CDY00564 | Canola | cytosol | 20.17 | 24.87 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 41.6 | 23.52 |
| CDY00560 | Canola | cytosol | 8.82 | 19.63 |
| CDX67743 | Canola | nucleus | 32.35 | 18.42 |
| CDX98294 | Canola | plastid | 29.41 | 18.42 |
| CDY06046 | Canola | cytosol | 44.54 | 18.37 |
| CDX67734 | Canola | cytosol | 34.87 | 18.16 |
| CDX88980 | Canola | cytosol | 44.54 | 17.67 |
| CDY00558 | Canola | cytosol | 44.54 | 17.67 |
| CDX71959 | Canola | cytosol | 44.96 | 17.57 |
| CDX98284 | Canola | cytosol | 39.92 | 16.21 |
| CDY00559 | Canola | nucleus | 9.66 | 11.73 |
Protein Annotations
| EnsemblPlants:CDY00562 | EnsemblPlantsGene:GSBRNA2T00110316001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR24007 |
| PANTHER:PTHR24007:SF12 | PFAM:PF00917 | PFscan:PS50144 | ProteinID:CDY00562 | ProteinID:CDY00562.1 | SUPFAM:SSF49599 |
| UniParc:UPI0004EB2AEF | MapMan:35.1 | : | : | : | : |
Description
BnaC04g23630D
Coordinates
chrLK031920:-:314762..316128
Molecular Weight (calculated)
27687.4 Da
IEP (calculated)
4.887
GRAVY (calculated)
-0.165
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKQVGEKFV SVIQNFSFVN SEKCYSDPFA IRGFKWRLLA ECDLVVLHLY MCITDCPPFP SEAVKVRLTI VNQLCEYRSI LKESDHWFDE KSPTWGCAIP
101: TQILEEDGGF LVNGDLKIVA EDRVRLIFER HPEAAVEFRA KNQHLRTTYI IFLLSLIETL YQPLQELSSE DLVEADIALT YLKDAGFKVD WLENKLDLLK
201: ARKEKEKACE VRVQEMEVQL HDLKHKFEIE KAELVVCN
101: TQILEEDGGF LVNGDLKIVA EDRVRLIFER HPEAAVEFRA KNQHLRTTYI IFLLSLIETL YQPLQELSSE DLVEADIALT YLKDAGFKVD WLENKLDLLK
201: ARKEKEKACE VRVQEMEVQL HDLKHKFEIE KAELVVCN
001: MEKQAHKKFC WIIKNFSPQS ERLYSVPVLI GDCKWRPIAY PIRDKYFSLC LQVVDFESLP CGWGRYVELR LTLRNQHNSL NLSIKADHCF DEKRTTWGIP
101: IPERIPICKL QTELYQSEHV VKGDFKIIAE VDVFEAVGTL TESDISGKAS ELLTKKIRND GNESGDLLKK TSPEKESNHV NESKPVRKLR NFVVLYKRHA
201: AMCSVLQEPI CLLGIFHYTN GEASWAEVRV GVFLLNMTLC LPDSQLFPSE VVKARLTIVN QLSEKLSISK ESEHCFDEQN PTLGYTFPYE LLVEDGGFLV
301: NEDLMIIVEV IGASDVFEDS STQGKVDVNG FQVLPSQVEY VRSIFERHPD IAVEFRAKNQ HLRTSCMIFL LSLIETLCQS LEELSNEDLV EADIALTYVK
401: DAGFKVDWLE KKLDQVKEKK EKELSDMVQL QEMEDHLLKL KQSCSDLDDL VVKKKDELSV TRSPLSFDDV V
101: IPERIPICKL QTELYQSEHV VKGDFKIIAE VDVFEAVGTL TESDISGKAS ELLTKKIRND GNESGDLLKK TSPEKESNHV NESKPVRKLR NFVVLYKRHA
201: AMCSVLQEPI CLLGIFHYTN GEASWAEVRV GVFLLNMTLC LPDSQLFPSE VVKARLTIVN QLSEKLSISK ESEHCFDEQN PTLGYTFPYE LLVEDGGFLV
301: NEDLMIIVEV IGASDVFEDS STQGKVDVNG FQVLPSQVEY VRSIFERHPD IAVEFRAKNQ HLRTSCMIFL LSLIETLCQS LEELSNEDLV EADIALTYVK
401: DAGFKVDWLE KKLDQVKEKK EKELSDMVQL QEMEDHLLKL KQSCSDLDDL VVKKKDELSV TRSPLSFDDV V
Arabidopsis Description
TRAF-like family protein [Source:TAIR;Acc:AT3G58430]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.