Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G58350.1 | CDX67730 | AT3G58350.1 | 20584941 |
| AT3G58350.1 | CDX84400 | AT3G58350.1 | 20584941 |
| AT3G58350.1 | CDX98279 | AT3G58350.1 | 20584941 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67730 | Canola | cytosol | 66.67 | 60.61 |
| AT3G58350.1 | Thale cress | cytosol | 53.7 | 48.17 |
| CDX88982 | Canola | cytosol | 19.26 | 44.44 |
| CDY52912 | Canola | cytosol | 46.67 | 42.28 |
| CDX67732 | Canola | cytosol | 43.33 | 40.77 |
| AT3G58400.1 | Thale cress | extracellular | 44.07 | 40.61 |
| CDX98280 | Canola | cytosol | 41.85 | 39.37 |
| CDY06044 | Canola | cytosol | 34.81 | 38.21 |
| CDY00561 | Canola | cytosol | 21.11 | 38.0 |
| CDX69523 | Canola | cytosol | 39.63 | 37.94 |
| CDX88985 | Canola | extracellular | 26.67 | 37.5 |
| CDY23318 | Canola | cytosol | 36.3 | 36.98 |
| CDY53703 | Canola | cytosol | 36.67 | 36.4 |
| CDY00562 | Canola | cytosol | 31.85 | 36.13 |
| CDY23317 | Canola | cytosol | 35.93 | 35.66 |
| CDX98278 | Canola | cytosol | 28.89 | 35.62 |
| CDX67741 | Canola | cytosol | 23.7 | 35.36 |
| CDX67729 | Canola | cytosol | 34.81 | 35.07 |
| CDX88981 | Canola | extracellular | 28.15 | 35.02 |
| CDY00560 | Canola | cytosol | 13.7 | 34.58 |
| CDX90477 | Canola | cytosol | 34.81 | 34.56 |
| CDY00566 | Canola | cytosol | 36.67 | 34.14 |
| CDY17006 | Canola | cytosol | 32.96 | 34.1 |
| CDY00567 | Canola | plastid | 24.81 | 33.67 |
| CDX84400 | Canola | nucleus | 15.19 | 33.61 |
| CDX88983 | Canola | cytosol | 34.44 | 33.57 |
| CDX71960 | Canola | cytosol | 17.41 | 32.64 |
| CDX88984 | Canola | cytosol | 37.41 | 32.48 |
| Bra003330.1-P | Field mustard | cytosol | 57.04 | 32.15 |
| CDX67733 | Canola | cytosol | 38.52 | 31.8 |
| CDY06045 | Canola | cytosol | 35.19 | 31.05 |
| CDY00554 | Canola | cytosol | 31.48 | 30.91 |
| CDX98281 | Canola | cytosol | 28.15 | 30.77 |
| CDX88978 | Canola | cytosol | 31.11 | 30.66 |
| CDX98283 | Canola | mitochondrion | 45.19 | 30.65 |
| CDY06047 | Canola | cytosol | 35.93 | 29.75 |
| CDX98291 | Canola | cytosol | 31.48 | 29.51 |
| CDX98282 | Canola | cytosol | 27.41 | 28.68 |
| CDX71958 | Canola | cytosol | 31.85 | 28.57 |
| CDX67742 | Canola | cytosol | 32.96 | 28.53 |
| CDY06042 | Canola | cytosol | 32.22 | 28.25 |
| CDY00564 | Canola | cytosol | 19.26 | 26.94 |
| CDY09631 | Canola | cytosol | 9.26 | 23.81 |
| CDX67743 | Canola | nucleus | 33.33 | 21.53 |
| CDY00558 | Canola | cytosol | 46.67 | 21.0 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 32.59 | 20.9 |
| CDX88980 | Canola | cytosol | 45.93 | 20.67 |
| CDX67734 | Canola | cytosol | 34.44 | 20.35 |
| CDY17817 | Canola | cytosol | 13.33 | 20.22 |
| CDY06046 | Canola | cytosol | 36.67 | 17.16 |
| CDX98294 | Canola | plastid | 23.33 | 16.58 |
| CDX98284 | Canola | cytosol | 34.07 | 15.7 |
| CDX71959 | Canola | cytosol | 35.19 | 15.6 |
| CDY00559 | Canola | nucleus | 5.56 | 7.65 |
| CDX67728 | Canola | cytosol | 1.11 | 7.14 |
Protein Annotations
| EnsemblPlants:CDX98279 | EnsemblPlantsGene:GSBRNA2T00105808001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 |
| PFscan:PS50144 | ProteinID:CDX98279 | ProteinID:CDX98279.1 | SUPFAM:SSF49599 | UniParc:UPI0004EDE71B | MapMan:35.1 |
Description
BnaC06g16400D
Coordinates
chrLK031904:-:307260..309471
Molecular Weight (calculated)
31054.4 Da
IEP (calculated)
5.978
GRAVY (calculated)
-0.265
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKPFNKKII WVIKNFSSLK SDKFNSDKFV VDGCIFMPIP REKITITCPC FWKSAIMNHC LLDGEDTQNI HLPYQTNVQK KLSRKHESQQ WFEKKSPGWG
101: RLSIMPLNEL HAKDAGFLVN GDLKIVVEID VLEVVGRLDV TEETSTIIET MDVNGFQILP SHAESVSRMF ERHSELASEF RPKNPNLRTA YISFLLSLIE
201: TMCQSPQELS QDDLTDAYAA MGFMRDAGFK LDWLEKKLDE GFALFLSFFP QCLDEKEVSR QYSSIGFTRF
101: RLSIMPLNEL HAKDAGFLVN GDLKIVVEID VLEVVGRLDV TEETSTIIET MDVNGFQILP SHAESVSRMF ERHSELASEF RPKNPNLRTA YISFLLSLIE
201: TMCQSPQELS QDDLTDAYAA MGFMRDAGFK LDWLEKKLDE GFALFLSFFP QCLDEKEVSR QYSSIGFTRF
001: MGKEVDNKFT WVIKNFSSQQ SRKNYSDEFF VDGCKWRLLA FPKGNGVEKL SLYLAVAGSE FLPDGWRRHA YFHFSVVNQL SDELSQARET KNWFDASTSD
101: WGFTSMLSLK KLHDKDGGFL VNGELKIVVD VSVLEVIGKL DVPVESEETT TKALSELEEN DVPEESEETT KALSKVDEND GAESNDSLKE ASSVKESMDV
201: NGFRVLPSQV ETVSCIFERH PDIASEFGPK NQHLRSAYMN VLLSLIKTMC QSTQELSKDD LSDADAALAY LTDAGLNLNW LEEKLEEVSE KKENEEAGET
301: RVHEIEEELK ELKLKCSNLE AQLEKEKADV SVARAPFSFD DIV
101: WGFTSMLSLK KLHDKDGGFL VNGELKIVVD VSVLEVIGKL DVPVESEETT TKALSELEEN DVPEESEETT KALSKVDEND GAESNDSLKE ASSVKESMDV
201: NGFRVLPSQV ETVSCIFERH PDIASEFGPK NQHLRSAYMN VLLSLIKTMC QSTQELSKDD LSDADAALAY LTDAGLNLNW LEEKLEEVSE KKENEEAGET
301: RVHEIEEELK ELKLKCSNLE AQLEKEKADV SVARAPFSFD DIV
Arabidopsis Description
MATH domain and coiled-coil domain-containing protein At3g58270 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2I9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.