Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014574.1-P | Field mustard | cytosol | 91.28 | 95.77 |
| AT3G58360.1 | Thale cress | cytosol | 67.79 | 67.79 |
| CDX67728 | Canola | cytosol | 8.72 | 61.9 |
| CDX67732 | Canola | cytosol | 57.05 | 59.23 |
| CDX67730 | Canola | cytosol | 58.39 | 58.59 |
| CDX98280 | Canola | cytosol | 56.04 | 58.19 |
| CDX88982 | Canola | cytosol | 20.81 | 52.99 |
| CDX98283 | Canola | mitochondrion | 69.46 | 52.01 |
| CDX67729 | Canola | cytosol | 46.64 | 51.87 |
| CDX98282 | Canola | cytosol | 43.62 | 50.39 |
| CDY17006 | Canola | cytosol | 43.96 | 50.19 |
| CDX88985 | Canola | extracellular | 31.54 | 48.96 |
| CDY23318 | Canola | cytosol | 42.95 | 48.3 |
| CDX71960 | Canola | cytosol | 23.15 | 47.92 |
| CDY00554 | Canola | cytosol | 43.96 | 47.64 |
| CDX67741 | Canola | cytosol | 28.86 | 47.51 |
| CDX88978 | Canola | cytosol | 43.29 | 47.08 |
| CDX98279 | Canola | cytosol | 42.28 | 46.67 |
| CDY09631 | Canola | cytosol | 16.11 | 45.71 |
| CDY00561 | Canola | cytosol | 22.82 | 45.33 |
| CDY06045 | Canola | cytosol | 46.31 | 45.1 |
| CDY53703 | Canola | cytosol | 40.94 | 44.85 |
| CDY06044 | Canola | cytosol | 36.91 | 44.72 |
| CDX69523 | Canola | cytosol | 41.95 | 44.33 |
| CDX88981 | Canola | extracellular | 32.21 | 44.24 |
| CDY00566 | Canola | cytosol | 42.95 | 44.14 |
| CDY00562 | Canola | cytosol | 35.23 | 44.12 |
| CDX98291 | Canola | cytosol | 42.62 | 44.1 |
| CDX88984 | Canola | cytosol | 45.64 | 43.73 |
| CDX88980 | Canola | cytosol | 87.58 | 43.5 |
| CDY00558 | Canola | cytosol | 87.58 | 43.5 |
| CDY23317 | Canola | cytosol | 39.6 | 43.38 |
| CDX88983 | Canola | cytosol | 39.26 | 42.24 |
| CDY00567 | Canola | plastid | 28.19 | 42.21 |
| CDY06047 | Canola | cytosol | 45.97 | 42.02 |
| CDX98278 | Canola | cytosol | 30.87 | 42.01 |
| CDX90477 | Canola | cytosol | 37.25 | 40.81 |
| CDY06042 | Canola | cytosol | 41.95 | 40.58 |
| CDX71958 | Canola | cytosol | 40.94 | 40.53 |
| CDY00564 | Canola | cytosol | 25.5 | 39.38 |
| CDX84400 | Canola | nucleus | 15.44 | 37.7 |
| CDY17817 | Canola | cytosol | 22.48 | 37.64 |
| CDX98281 | Canola | cytosol | 30.54 | 36.84 |
| CDX67742 | Canola | cytosol | 37.25 | 35.58 |
| CDY00560 | Canola | cytosol | 12.75 | 35.51 |
| CDX67733 | Canola | cytosol | 37.25 | 33.95 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 36.91 | 26.13 |
| CDX67743 | Canola | nucleus | 35.91 | 25.6 |
| CDX67734 | Canola | cytosol | 37.58 | 24.51 |
| CDX98294 | Canola | plastid | 30.54 | 23.95 |
| CDY06046 | Canola | cytosol | 45.3 | 23.4 |
| CDX98284 | Canola | cytosol | 42.62 | 21.67 |
| CDY00559 | Canola | nucleus | 11.74 | 17.86 |
| CDX71959 | Canola | cytosol | 34.9 | 17.08 |
Protein Annotations
| EnsemblPlants:CDY52912 | EnsemblPlantsGene:GSBRNA2T00008090001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR24007 |
| PANTHER:PTHR24007:SF12 | PFAM:PF00917 | PFscan:PS50144 | ProteinID:CDY52912 | ProteinID:CDY52912.1 | SEG:seg |
| SMART:SM00061 | SUPFAM:SSF49599 | UniParc:UPI0004EF0CC2 | UniProt:A0A078ISF8 | MapMan:35.1 | : |
Description
BnaA06g00060DBnaA06g00060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ISF8]
Coordinates
chrLK033141:+:53816..55401
Molecular Weight (calculated)
34203.9 Da
IEP (calculated)
5.087
GRAVY (calculated)
-0.462
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEHSMKKIT WTIKNFSSLQ REKICSDPFV VGRCEWRLCA YPKGNNVDYL FLFLEVADHE SLPCGWRRNV RFSLSIVNQN TIKRSRQNDE QKWFGEESPR
101: WGRVSMFPLN EIHAKESGYL VNGEFKIVAE IAVIAAIGKL DIAEETSTII ETMDVNGFQL FPSQMELVSR LLERHPEIAS DIRTKNPNLR MGYMSLLLSL
201: IETLRQSPHK LSKTDLAEAD AALGSLTNAE FKLDWLEKKL DEMAEKKEKE EAGEARVREI EEDLKDLNQK CSDLEAQLEK QKLELSAAKT PISFDDVF
101: WGRVSMFPLN EIHAKESGYL VNGEFKIVAE IAVIAAIGKL DIAEETSTII ETMDVNGFQL FPSQMELVSR LLERHPEIAS DIRTKNPNLR MGYMSLLLSL
201: IETLRQSPHK LSKTDLAEAD AALGSLTNAE FKLDWLEKKL DEMAEKKEKE EAGEARVREI EEDLKDLNQK CSDLEAQLEK QKLELSAAKT PISFDDVF
001: MGKQLAKKIT WAIENFSSLH SKKIYSDPFI VGGCKWRFLV YPKGNNVDYL FLYLEVADYE SLSPEWRRHA RYLLNVVNQN SVKRSKQNEE QKWFDVQSPR
101: WGRLSMFPLN EINAKDSGFL VNGELKIVAE IEVLEVIGKL DVSEETSTIM ESMDFNGFQL LPSQVDFVRH MFEKHPEIAS EFRLKNPNLR AGYMSLLLSL
201: IETLRQSPQE LNKVDLAEGY VALRSITDAG FKVDWLEKKL VEISEKKNKE EAGETRMQEI NEELESLKQK CLDLEAQLEK EKAEVFAAKS PLSFNDVF
101: WGRLSMFPLN EINAKDSGFL VNGELKIVAE IEVLEVIGKL DVSEETSTIM ESMDFNGFQL LPSQVDFVRH MFEKHPEIAS EFRLKNPNLR AGYMSLLLSL
201: IETLRQSPQE LNKVDLAEGY VALRSITDAG FKVDWLEKKL VEISEKKNKE EAGETRMQEI NEELESLKQK CLDLEAQLEK EKAEVFAAKS PLSFNDVF
Arabidopsis Description
MATH domain and coiled-coil domain-containing protein At3g58360 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2I0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.