Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G44790.1 | Thale cress | cytosol | 56.74 | 55.86 |
| CDX69523 | Canola | cytosol | 47.65 | 53.9 |
| AT3G58210.1 | Thale cress | plastid | 53.6 | 51.82 |
| AT3G44800.1 | Thale cress | cytosol | 52.66 | 49.12 |
| AT3G58360.1 | Thale cress | cytosol | 45.77 | 48.99 |
| AT2G05410.2 | Thale cress | cytosol | 46.4 | 48.84 |
| AT3G58410.1 | Thale cress | cytosol | 50.16 | 48.78 |
| AT3G58340.1 | Thale cress | cytosol | 49.53 | 48.62 |
| AT1G31390.1 | Thale cress | cytosol | 40.75 | 48.51 |
| AT3G58350.1 | Thale cress | cytosol | 45.77 | 48.51 |
| AT2G05400.3 | Thale cress | cytosol | 32.6 | 47.93 |
| AT3G58270.3 | Thale cress | cytosol | 51.41 | 47.81 |
| CDX90477 | Canola | cytosol | 40.75 | 47.79 |
| Bra012666.1-P | Field mustard | cytosol | 40.75 | 47.79 |
| CDY09631 | Canola | cytosol | 15.67 | 47.62 |
| AT2G05420.1 | Thale cress | cytosol | 43.89 | 47.14 |
| AT3G58370.1 | Thale cress | cytosol | 43.89 | 46.36 |
| AT1G31400.1 | Thale cress | cytosol | 39.81 | 45.68 |
| Bra008697.1-P | Field mustard | plastid | 25.71 | 45.56 |
| AT2G01790.1 | Thale cress | cytosol | 38.24 | 45.35 |
| AT3G58260.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 45.45 | 45.17 |
| AT1G31380.1 | Thale cress | cytosol | 24.76 | 45.14 |
| AT3G58400.1 | Thale cress | extracellular | 41.38 | 45.05 |
| AT3G27040.1 | Thale cress | cytosol | 37.62 | 44.28 |
| AT3G29580.1 | Thale cress | cytosol | 42.32 | 44.12 |
| AT3G58250.1 | Thale cress | cytosol | 42.32 | 42.59 |
| AT1G31370.1 | Thale cress | cytosol | 25.39 | 41.97 |
| AT3G58380.1 | Thale cress | cytosol | 39.19 | 40.72 |
| AT3G44805.1 | Thale cress | cytosol | 31.03 | 39.92 |
| AT3G58320.1 | Thale cress | nucleus | 25.08 | 35.71 |
| AT3G58240.1 | Thale cress | cytosol | 34.17 | 34.38 |
| AT3G58220.2 | Thale cress | cytosol | 47.34 | 33.33 |
| AT3G58430.1 | Thale cress | cytosol | 46.4 | 31.42 |
| AT3G58440.1 | Thale cress | cytosol | 40.13 | 21.3 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.1 | EntrezGene:824989 | UniProt:A0A178VL65 | ProteinID:AEE79753.1 | ArrayExpress:AT3G58200 |
| EnsemblPlantsGene:AT3G58200 | RefSeq:AT3G58200 | TAIR:AT3G58200 | RefSeq:AT3G58200-TAIR-G | EnsemblPlants:AT3G58200.1 | TAIR:AT3G58200.1 |
| EMBL:AY087419 | EMBL:BT004114 | EMBL:BT005114 | ProteinID:CAB68158.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | RefSeq:NP_191379.1 |
| ProteinID:OAP06191.1 | PFAM:PF00917 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50144 | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 |
| UniProt:Q9M2J6 | SMART:SM00061 | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI000000C28A | SEG:seg |
Description
MATH domain and coiled-coil domain-containing protein At3g58200 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2J6]
Coordinates
chr3:-:21559817..21561516
Molecular Weight (calculated)
36862.8 Da
IEP (calculated)
5.411
GRAVY (calculated)
-0.250
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKEADNKFR WVIKNFSSLG SERVFSDIFV VGSCKWRLMA YPKGVRDNRC FSLFLVVTDF KTLPCDWKRH TRLRLNVVNQ LSEELSILKE TQMWFDQKTP
101: AWGFLAMLPL TELKAENGGF LVNEEVKIVV EVDVVEALGK LEESEEATQP LKKVKLEAFV ESKGLLKETS SVKEEIIDVN VFHVLPSQVE FVSRVFERYP
201: EIASIFQAKK QHLRTACMYV LLSLIETLCK SLEELSNDDL VGGDNALQYL KFSGFKVDWL EKKLEEVKEK KKEEQIGETR MQEMKVFKQK CSDIEALMER
301: EKSKLLVTRG SPLTLDDVL
101: AWGFLAMLPL TELKAENGGF LVNEEVKIVV EVDVVEALGK LEESEEATQP LKKVKLEAFV ESKGLLKETS SVKEEIIDVN VFHVLPSQVE FVSRVFERYP
201: EIASIFQAKK QHLRTACMYV LLSLIETLCK SLEELSNDDL VGGDNALQYL KFSGFKVDWL EKKLEEVKEK KKEEQIGETR MQEMKVFKQK CSDIEALMER
301: EKSKLLVTRG SPLTLDDVL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.