Factsheet for Bra012666.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90477	Canola	cytosol	100.0	100.0
Bra008697.1-P	Field mustard	plastid	32.35	48.89
Bra014571.1-P	Field mustard	cytosol	30.51	43.46
Bra014573.1-P	Field mustard	cytosol, extracellular, plastid	16.54	42.86
Bra007390.1-P	Field mustard	cytosol	38.6	42.68
AT3G58210.1	Thale cress	plastid	51.1	42.12
Bra003328.1-P	Field mustard	cytosol	20.96	41.3
AT3G58200.1	Thale cress	cytosol	47.79	40.75
Bra007388.1-P	Field mustard	cytosol	45.22	40.46
Bra003329.1-P	Field mustard	cytosol	42.65	39.46
Bra014574.1-P	Field mustard	cytosol	40.81	39.08
AT3G44790.1	Thale cress	cytosol	46.32	38.89
Bra014575.1-P	Field mustard	cytosol	42.28	38.59
Bra007386.1-P	Field mustard	cytosol	43.75	36.5
Bra014577.1-P	Field mustard	cytosol	36.76	36.5
Bra007389.1-P	Field mustard	cytosol	41.91	35.74
Bra014088.1-P	Field mustard	cytosol	34.56	34.94
AT3G44800.1	Thale cress	cytosol	43.01	34.21
AT3G44805.1	Thale cress	cytosol	30.51	33.47
Bra003331.1-P	Field mustard	cytosol	39.34	32.82
Bra007392.1-P	Field mustard	cytosol	38.6	32.21
AT3G58220.2	Thale cress	cytosol	47.06	28.26
Bra014572.1-P	Field mustard	cytosol	43.75	26.56
Bra003330.1-P	Field mustard	cytosol	41.54	23.59
Bra007387.1-P	Field mustard	cytosol	40.44	23.35
Bra003332.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	37.87	15.35
Bra003337.1-P	Field mustard	nucleus	31.25	14.68

Protein Annotations

EnsemblPlants:Bra012666.1	EnsemblPlants:Bra012666.1-P	EnsemblPlantsGene:Bra012666	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	ncoils:Coil
PANTHER:PTHR24007	PANTHER:PTHR24007:SF12	PFAM:PF00917	PFscan:PS50144	SEG:seg	SUPFAM:SSF49599
UniParc:UPI0002540998	UniProt:M4D856	MapMan:35.1	:	:	:

Description

AT3G58250 (E=2e-054) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA03:+:22849741..22850992

Molecular Weight (calculated)

30692.1 Da

IEP (calculated)

6.898

GRAVY (calculated)

-0.252

Length

272 amino acids

Sequence
(BLAST)

001: MGDDIKFTWV IKNFSSLESK KSYSDQVVGS GCKWSLMAYP GENSKASTLC LAIWVNDGPN VRSGWSEHAK LSCTIVNKNP EKVSQMEETY CAERTKWGFR
101: FISIIPLSEL EDENGGFIVN GEVKIVVELE IFVLVKQTLN NTKLNDKGDL VDVNGFQVLP SQVTFARRIF EKHSDVALVL RAKNKHLRTA CMNVLLCLIE
201: TLCLGPGELS SEDLVEADNA LAYVKNAGFK VDWLEKKLTK VKENKKMVHI GETRMRELEE ELKNLKQKSL EV

Best Arabidopsis Sequence Match ( AT3G58210.1 )
(BLAST)

001: MGNLVDNKFT WVIQNFSSSQ SRVVPSNQFV IGGCKWRLLV YPEGFNKSGD HLSLFLEVAD PRSLPPGWSR HARYLLTIVN QHSDKISKRN EATKWFNQKI
101: PGWGLSAMIP LTKLHAKDGG FLVNDELKIV AEVNVLEVIG KLDVPEESEE ETQVTQPMKK VKVDYDHVES NDLMINETPP VSELMDVNGF QVLPSQVDFV
201: KRIFEKHPDI AKDFRPKNPH LRKACMNFLL SLMETLCQPP QKLSNEDLVE ADNALTYVKV SGFKVDWLEK KLEEVKKKKE EEQTGEARIQ ELEEELKEFK
301: QKCLDREAML EKEKAKVLTA RAPLTLDDVI

Arabidopsis Description

MATH domain and coiled-coil domain-containing protein At3g58210 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2J5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.