Factsheet for Bra007388.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06045	Canola	cytosol	97.04	96.41
Bra007386.1-P	Field mustard	cytosol	79.61	74.23
Bra007389.1-P	Field mustard	cytosol	69.08	65.83
AT3G58370.1	Thale cress	cytosol	56.91	57.28
Bra007390.1-P	Field mustard	cytosol	40.13	49.59
Bra014574.1-P	Field mustard	cytosol	44.08	47.18
Bra003328.1-P	Field mustard	cytosol	21.05	46.38
Bra014573.1-P	Field mustard	cytosol, extracellular, plastid	15.79	45.71
Bra014575.1-P	Field mustard	cytosol	44.74	45.64
Bra014571.1-P	Field mustard	cytosol	28.62	45.55
AT3G58380.1	Thale cress	cytosol	45.72	45.28
Bra012666.1-P	Field mustard	cytosol	40.46	45.22
Bra014088.1-P	Field mustard	cytosol	39.47	44.61
Bra003329.1-P	Field mustard	cytosol	43.09	44.56
Bra007387.1-P	Field mustard	cytosol	68.42	44.16
Bra014577.1-P	Field mustard	cytosol	39.8	44.16
Bra007392.1-P	Field mustard	cytosol	44.74	41.72
Bra008697.1-P	Field mustard	plastid	22.7	38.33
Bra003331.1-P	Field mustard	cytosol	40.79	38.04
Bra014572.1-P	Field mustard	cytosol	49.67	33.71
Bra003330.1-P	Field mustard	cytosol	47.37	30.06
Bra003337.1-P	Field mustard	nucleus	37.5	19.69
Bra003332.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	41.45	18.78

Protein Annotations

Gene3D:2.60.210.10	MapMan:35.1	EnsemblPlantsGene:Bra007388	EnsemblPlants:Bra007388.1	EnsemblPlants:Bra007388.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	UniProt:M4CT46
InterPro:MATH/TRAF_dom	PFAM:PF00917	PFAM:PF05278	InterPro:PLipase-like	PFscan:PS50144	PANTHER:PTHR24007
PANTHER:PTHR24007:SF12	SMART:SM00061	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI0002542DD0	SEG:seg

Description

AT3G44790 (E=5e-070) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA09:+:28963665..28964981

Molecular Weight (calculated)

34350.1 Da

IEP (calculated)

7.454

GRAVY (calculated)

-0.376

Length

304 amino acids

Sequence
(BLAST)

001: MVSEADDNKF TWVIKDFSSL QSRKIYSDEF LIGGCKWCLI AYPKGSKVDS LSLYLGVADH ESLPLGWTRN AKFSLKLVNQ FSDKSSILRE ATDWYNQKTP
101: SFGFTKFLPL AKLHSKDGGF LVNNELKIVA EVHVLQVIGE AEGSQESVQP MKKTKMNGYG TGNKTVDVNG FQVSTSQVAY VRCVFEKHPD FASKVRSNNQ
201: HLKSTYMNVL LELIETLCQL PENLSDDDLS EASAAVLYLS QVGFKVDWLE KKLEEVKEKK KKMYTGKAQL QRMEEELQNL TKKCSDLEDL VKKQNVALSF
301: SDVV

Best Arabidopsis Sequence Match ( AT3G58370.1 )
(BLAST)

001: MESEEVDNKF TWVIKNFSTL QYDKIYSDPF VIGGCKWHLL AYPKGNKFNN SLSLYLVVDD ARALPCGWRR YAQFSLTIIN QLTDKLSQRG GTEKQNWFNQ
101: RNLGSGFTSM IPLPNLHAKN AGYLVNGEVK IVVEINDLEV IGKLDVSEET SPVKESIDVN GFQVLPSQVE SVKCIFERHP DFASKFRPKN RHLKSTYMTV
201: LLGLIKTLCQ LPEELTDDDL DEASVAVSYV ENGGLRLDWL EKKLAEVKAK KKKVETGKAR LQRAEEELQK LNQKCLELKA FLEKENADVS EANVPLSFED
301: VV

Arabidopsis Description

TRAF-like family protein [Source:TAIR;Acc:AT3G58370]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.