Factsheet for Bra007390.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06044	Canola	cytosol	90.65	90.65
Bra014571.1-P	Field mustard	cytosol	34.15	43.98
AT3G58340.1	Thale cress	cytosol	57.32	43.38
Bra007388.1-P	Field mustard	cytosol	49.59	40.13
Bra007392.1-P	Field mustard	cytosol	52.44	39.57
Bra012666.1-P	Field mustard	cytosol	42.68	38.6
Bra014575.1-P	Field mustard	cytosol	45.53	37.58
Bra014574.1-P	Field mustard	cytosol	42.28	36.62
Bra007386.1-P	Field mustard	cytosol	48.37	36.5
Bra003329.1-P	Field mustard	cytosol	43.5	36.39
Bra014573.1-P	Field mustard	cytosol, extracellular, plastid	15.45	36.19
Bra003331.1-P	Field mustard	cytosol	46.34	34.97
Bra014577.1-P	Field mustard	cytosol	37.8	33.94
Bra007389.1-P	Field mustard	cytosol	43.09	33.23
Bra008697.1-P	Field mustard	plastid	23.58	32.22
Bra014088.1-P	Field mustard	cytosol	34.15	31.23
Bra014572.1-P	Field mustard	cytosol	54.88	30.13
Bra003328.1-P	Field mustard	cytosol	16.26	28.99
Bra003330.1-P	Field mustard	cytosol	48.37	24.84
Bra007387.1-P	Field mustard	cytosol	41.87	21.87
Bra003337.1-P	Field mustard	nucleus	39.02	16.58
Bra003332.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	42.68	15.65

Protein Annotations

EnsemblPlants:Bra007390.1	EnsemblPlants:Bra007390.1-P	EnsemblPlantsGene:Bra007390	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR24007
PANTHER:PTHR24007:SF12	PFAM:PF00917	PFscan:PS50144	SMART:SM00061	SUPFAM:SSF49599	UniParc:UPI0002542DD2
UniProt:M4CT48	MapMan:35.1	:	:	:	:

Description

AT3G58250 (E=5e-060) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA09:-:28970430..28971506

Molecular Weight (calculated)

28037.6 Da

IEP (calculated)

5.026

GRAVY (calculated)

-0.148

Length

246 amino acids

Sequence
(BLAST)

001: MVNPNKKSFA WLIENFSSLQ SDKLYSAPVL ISGFYWDLFT YPKGYKGGDS LVVSLAVTDG QSLPSEWARY VKFRLTIVNH LSHELSIHRE TNIWFDQKAP
101: GWGLSGMLPF AKLHDKDGGF LVNDELKIVA EIEALEVIGT LDESKDLLDK TCIDVNGFQV LPSQVEAVRG MFERHPDIAV EFRAKNQHLR TACMNFLLSL
201: SEMLIKSLEE FSNEDLMEAD IALTYLKDVG FKVDWLEKRL DQVKRT

Best Arabidopsis Sequence Match ( AT3G58340.2 )
(BLAST)

001: MAKAVDKKFC WEIKNFSSLN SERCHSVPVV IGDCKWRLVA FPKGYKADYL SLYLEVADFK SLPSGWRRYV KFRACIVNQL SQELSVQQET QRWFDQNAPG
101: WGFENMLLLT ELNAKDGGFL VNGQVMIVAE VEFLEVIGTL DESEKTQEVA QQVKEIIQPN DLINKTQEVA QQVKESIDVN GFQVLPSQVE SVRRIFKKHP
201: DIAVGFQVKN QHLRKTFMNF LVNVIETMCQ SLQELSNEDL VEVDIALTYL KDAGFKVDWL EKKLDHVKEK KEKEQSGLII LQGIEQQLHE LMHKCEKKKS
301: EVLSVGAPLK FDDVV

Arabidopsis Description

MATH domain and coiled-coil domain-containing protein At3g58340 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2I2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.