Factsheet for Bra003329.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67729	Canola	cytosol	86.73	95.15
Bra003328.1-P	Field mustard	cytosol	39.12	83.33
AT3G58270.3	Thale cress	cytosol	69.39	59.48
Bra014574.1-P	Field mustard	cytosol	50.34	52.11
Bra014575.1-P	Field mustard	cytosol	50.68	50.0
Bra014571.1-P	Field mustard	cytosol	31.63	48.69
Bra008697.1-P	Field mustard	plastid	28.91	47.22
Bra007390.1-P	Field mustard	cytosol	36.39	43.5
Bra014577.1-P	Field mustard	cytosol	40.48	43.43
Bra014088.1-P	Field mustard	cytosol	39.46	43.12
Bra007388.1-P	Field mustard	cytosol	44.56	43.09
Bra014573.1-P	Field mustard	cytosol, extracellular, plastid	15.31	42.86
Bra012666.1-P	Field mustard	cytosol	39.46	42.65
Bra007386.1-P	Field mustard	cytosol	45.58	41.1
Bra007389.1-P	Field mustard	cytosol	42.52	39.19
Bra007392.1-P	Field mustard	cytosol	42.86	38.65
Bra003331.1-P	Field mustard	cytosol	40.82	36.81
Bra003330.1-P	Field mustard	cytosol	51.02	31.32
Bra014572.1-P	Field mustard	cytosol	45.92	30.13
Bra007387.1-P	Field mustard	cytosol	43.2	26.96
Bra003332.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	45.24	19.82
Bra003337.1-P	Field mustard	nucleus	34.01	17.27

Protein Annotations

Gene3D:2.60.210.10	MapMan:35.1	EnsemblPlantsGene:Bra003329	EnsemblPlants:Bra003329.1	EnsemblPlants:Bra003329.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	UniProt:M4CGJ6
InterPro:MATH/TRAF_dom	PFAM:PF00917	PFAM:PF05278	InterPro:PLipase-like	PFscan:PS50144	PANTHER:PTHR24007
PANTHER:PTHR24007:SF12	SMART:SM00061	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI0002541634	SEG:seg

Description

AT3G58350 (E=6e-070) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA07:-:12620123..12621717

Molecular Weight (calculated)

33362.3 Da

IEP (calculated)

4.886

GRAVY (calculated)

-0.509

Length

294 amino acids

Sequence
(BLAST)

001: MGKEVVSQFT WVIRNFSSLQ SEKVYSDVFT VSGCKWRLLA FPKGNGVKCL SLYLAVSGSQ SLPYGWRRRA ELCLSVVNQV SEELSQTKVT YHCFDAKDFD
101: WGFTTMLPLD KIHDKNDEGG GESESVNMLE GDDGAESNDL LEVSVNESTD VNGFQVLPSQ VETMSRIFER HPDIASKFRP KNEHLRTAYI NVLLSLIKTL
201: CQSTHELSKD DLTDAYASLV YLTNAGLNLD WLKKKLEERS EKKEKHEASE RRMKEIEEEL KDLKQKCSNL EAELEKEKAD VSVARSPLSF DDVV

Best Arabidopsis Sequence Match ( AT3G58270.1 )
(BLAST)

001: MGKEVDNKFT WVIKNFSSQQ SRKNYSDEFF VDGCKWRLLA FPKGNGVEKL SLYLAVAGSE FLPDGWRRHA YFHFSVVNQL SDELSQARET KNWFDASTSD
101: WGFTSMLSLK KLHDKDGGFL VNGELKIVVD VSVLEVIGKL DVPVESEETT TKALSELEEN DVPEESEETT KALSKVDEND GAESNDSLKE ASSVKESMDV
201: NGFRVLPSQV ETVSCIFERH PDIASEFGPK NQHLRSAYMN VLLSLIKTMC QSTQELSKDD LSDADAALAY LTDAGLNLNW LEEKLEEVSE KKENEEAGET
301: RVHEIEEELK ELKLKCSNLE AQLEKEKADV SVARAPFSFD DIV

Arabidopsis Description

MATH domain and coiled-coil domain-containing protein At3g58270 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2I9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.