Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009552.1-P | Field mustard | nucleus | 99.23 | 99.23 |
| CDY10408 | Canola | nucleus | 90.77 | 87.08 |
| AT5G03060.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 43.46 | 38.7 |
| CDY25272 | Canola | nucleus | 30.77 | 33.33 |
| CDX94230 | Canola | nucleus | 30.0 | 31.58 |
Protein Annotations
| EnsemblPlants:CDX70331 | EnsemblPlantsGene:GSBRNA2T00136490001 | ncoils:Coil | ProteinID:CDX70331 | ProteinID:CDX70331.1 | SEG:seg |
| UniParc:UPI0004EEAE63 | MapMan:35.2 | : | : | : | : |
Description
BnaA10g26800D
Coordinates
chrLK031790:+:4160274..4161662
Molecular Weight (calculated)
29537.3 Da
IEP (calculated)
4.731
GRAVY (calculated)
-0.988
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAAQEDLLL TTRHQMLMEN HESLKQDYAS LEQRFKLVED LNAMMKPRLQ NQSQSKELRL LKDLERERKE KEEFKKMVEV LEATNSELVL KNEELLTALE
101: KQEEEEKRQE EKFDELARIC DELEKECLHL KSLYDDPKRL NGGQGKSNVG LEDDVFVVGE SHNAVKNNNN NTVADAIVLS DESDAESDRP TRESNVNTPL
201: RGVIKQEEEE SSNGVNSSQV KRSSKSKVKH PSSSSSSSSS SDVYVVSLKG CRDDGYNKTL
101: KQEEEEKRQE EKFDELARIC DELEKECLHL KSLYDDPKRL NGGQGKSNVG LEDDVFVVGE SHNAVKNNNN NTVADAIVLS DESDAESDRP TRESNVNTPL
201: RGVIKQEEEE SSNGVNSSQV KRSSKSKVKH PSSSSSSSSS SDVYVVSLKG CRDDGYNKTL
001: MTGKSSARSN KSGKNKISSV ATPTRRNLVV QEEILATKHE ILKENYENLE KDYKSIEESF KQMNEMNEIM KFQYQKQIKE LEEKILSLLK DLEKERSEKE
101: EYMKEMKGMI SEKEAIINDL SVKNQELLIA KEEEVEKLKK MENKYAELKE RFDAAESQCS FLKSLFDAEN LAGLGSSDVA FENEVIVVED YNVTIKNEVI
201: MVDDHNVNNT PTDTIVILDE SDAENDNPHP RESNIISENS VDVKQEQQSA GPSSSKVNRL LSSSSSSSSS SSVEHVFVEL PFKRSRDIYN KS
101: EYMKEMKGMI SEKEAIINDL SVKNQELLIA KEEEVEKLKK MENKYAELKE RFDAAESQCS FLKSLFDAEN LAGLGSSDVA FENEVIVVED YNVTIKNEVI
201: MVDDHNVNNT PTDTIVILDE SDAENDNPHP RESNIISENS VDVKQEQQSA GPSSSKVNRL LSSSSSSSSS SSVEHVFVEL PFKRSRDIYN KS
Arabidopsis Description
Striatin-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LYX9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.