Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70331 | Canola | nucleus | 38.7 | 43.46 |
| Bra009552.1-P | Field mustard | nucleus | 38.36 | 43.08 |
| CDY10408 | Canola | nucleus | 38.01 | 40.96 |
| AT4G11100.1 | Thale cress | nucleus | 37.33 | 37.98 |
Protein Annotations
| MapMan:35.2 | EntrezGene:831678 | ProteinID:AED90552.1 | ArrayExpress:AT5G03060 | EnsemblPlantsGene:AT5G03060 | RefSeq:AT5G03060 |
| TAIR:AT5G03060 | RefSeq:AT5G03060-TAIR-G | EnsemblPlants:AT5G03060.1 | TAIR:AT5G03060.1 | ProteinID:CAB86073.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0008150 | RefSeq:NP_195926.1 | PO:PO:0000037 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0025022 | UniProt:Q9LYX9 | UniParc:UPI000009DF99 |
| SEG:seg | : | : | : | : | : |
Description
Striatin-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LYX9]
Coordinates
chr5:-:716466..718014
Molecular Weight (calculated)
33323.0 Da
IEP (calculated)
4.628
GRAVY (calculated)
-0.793
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGKSSARSN KSGKNKISSV ATPTRRNLVV QEEILATKHE ILKENYENLE KDYKSIEESF KQMNEMNEIM KFQYQKQIKE LEEKILSLLK DLEKERSEKE
101: EYMKEMKGMI SEKEAIINDL SVKNQELLIA KEEEVEKLKK MENKYAELKE RFDAAESQCS FLKSLFDAEN LAGLGSSDVA FENEVIVVED YNVTIKNEVI
201: MVDDHNVNNT PTDTIVILDE SDAENDNPHP RESNIISENS VDVKQEQQSA GPSSSKVNRL LSSSSSSSSS SSVEHVFVEL PFKRSRDIYN KS
101: EYMKEMKGMI SEKEAIINDL SVKNQELLIA KEEEVEKLKK MENKYAELKE RFDAAESQCS FLKSLFDAEN LAGLGSSDVA FENEVIVVED YNVTIKNEVI
201: MVDDHNVNNT PTDTIVILDE SDAENDNPHP RESNIISENS VDVKQEQQSA GPSSSKVNRL LSSSSSSSSS SSVEHVFVEL PFKRSRDIYN KS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.