Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70331 | Canola | nucleus | 87.08 | 90.77 |
| AT5G03060.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 40.96 | 38.01 |
| CDY25272 | Canola | nucleus | 29.52 | 33.33 |
| CDX94230 | Canola | nucleus | 28.78 | 31.58 |
Protein Annotations
| EnsemblPlants:CDY10408 | EnsemblPlantsGene:GSBRNA2T00032322001 | ncoils:Coil | ProteinID:CDY10408 | ProteinID:CDY10408.1 | SEG:seg |
| UniParc:UPI0004EF4C1A | UniProt:A0A078FE71 | MapMan:35.2 | : | : | : |
Description
BnaCnng03090DBnaCnng03090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FE71]
Coordinates
chrLK032003:+:318099..319502
Molecular Weight (calculated)
30780.5 Da
IEP (calculated)
5.008
GRAVY (calculated)
-1.121
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAQEDLLL TTRHQMLMEN HESLKQDYAS LEQRFKLVED LNAMMKPRLQ NQNQSKELRL LKDLERERKE KEEYKKMVEV LEATNSELML KNEELLTALE
101: KQEEEEKRQE EKFDELAKKC DEIEKECSRL QSIYDDGKRL NGRQGKSNVG LEDDVFVVGE SHNVVNNNNN TVDDAIVLSD ESDAETDKHT RESNVNTPLR
201: GVIKQEEESS NGVNSSQVKR SSSSSKAKHP SSSSKAKHPS SSSSSSSSSS SSDVYVVSLK RSRDDGYNKT L
101: KQEEEEKRQE EKFDELAKKC DEIEKECSRL QSIYDDGKRL NGRQGKSNVG LEDDVFVVGE SHNVVNNNNN TVDDAIVLSD ESDAETDKHT RESNVNTPLR
201: GVIKQEEESS NGVNSSQVKR SSSSSKAKHP SSSSKAKHPS SSSSSSSSSS SSDVYVVSLK RSRDDGYNKT L
001: MTGKSSARSN KSGKNKISSV ATPTRRNLVV QEEILATKHE ILKENYENLE KDYKSIEESF KQMNEMNEIM KFQYQKQIKE LEEKILSLLK DLEKERSEKE
101: EYMKEMKGMI SEKEAIINDL SVKNQELLIA KEEEVEKLKK MENKYAELKE RFDAAESQCS FLKSLFDAEN LAGLGSSDVA FENEVIVVED YNVTIKNEVI
201: MVDDHNVNNT PTDTIVILDE SDAENDNPHP RESNIISENS VDVKQEQQSA GPSSSKVNRL LSSSSSSSSS SSVEHVFVEL PFKRSRDIYN KS
101: EYMKEMKGMI SEKEAIINDL SVKNQELLIA KEEEVEKLKK MENKYAELKE RFDAAESQCS FLKSLFDAEN LAGLGSSDVA FENEVIVVED YNVTIKNEVI
201: MVDDHNVNNT PTDTIVILDE SDAENDNPHP RESNIISENS VDVKQEQQSA GPSSSKVNRL LSSSSSSSSS SSVEHVFVEL PFKRSRDIYN KS
Arabidopsis Description
Striatin-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LYX9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.