Factsheet for Bra033157.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007386.1-P
Bra007387.1-P
Bra007388.1-P
Bra007389.1-P
Bra025069.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11100.1	Bra007386.1-P	AT3G58380.1	21798944
AT4G11100.1	Bra007387.1-P	AT3G58380.1	21798944
AT4G11100.1	Bra007388.1-P	AT3G58380.1	21798944
AT4G11100.1	Bra007389.1-P	AT3G58380.1	21798944
AT4G11100.1	Bra025069.1-P	AT5G45600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25272	Canola	nucleus	99.58	99.58
CDX94230	Canola	nucleus	90.42	87.85
AT4G11100.1	Thale cress	nucleus	48.75	40.77
Bra009552.1-P	Field mustard	nucleus	32.92	30.38

Protein Annotations

EnsemblPlants:Bra033157.1	EnsemblPlants:Bra033157.1-P	EnsemblPlantsGene:Bra033157	ncoils:Coil	SEG:seg	UniParc:UPI00025455C4
UniProt:M4EWH3	MapMan:35.2	:	:	:	:

Description

AT4G11100 (E=5e-034) | unknown protein

Coordinates

chrA02:-:17053005..17053813

Molecular Weight (calculated)

26640.9 Da

IEP (calculated)

5.823

GRAVY (calculated)

-0.965

Length

240 amino acids

Sequence
(BLAST)

001: MAGTSDKAGK NSKGVRLATV KDESASSSKG NSCTKIEYEI LKENHETLKV DYESLQKRVK LAEETYEVMK KLLQSKGEGL EVTNARLVED CARERSDKDK
101: YRKMESERKA KMDELRKREE ELLMATRKGK EDSAELESKF VALAERFCVV EADCSYLKSL YDAEVAASGN NNANNDATVI SDHNDQCKKQ ERAVTNHHSP
201: PSSASPSSSS SDGYDVVFKL PANWPEWATP KGPGDDSSKS

Best Arabidopsis Sequence Match ( AT4G11100.2 )
(BLAST)

001: MMFGLEKTMT LEHEILKENH ETLLKDYESL QERIKHAEEA YEAIKLHHEN KAKELEVSNK RLLEECMKER REKAKVRKTF EEMKKTMESE RTAIVDELKS
101: KNQELLLGKK KEEEELVKME NKYVELAEKF DVVEKECAYL KSLYDAEVVA SVTQSAVISG VGETDNLIGQ GENEANQNVN NAVTDAIMIS DDENDNNPPI
201: ESNISSHRSG DRNQEEEGRN RGNSATENRA SGETFTPVSA NHPPPFSPSS SSSSSSSSDG AEIVLKLPRN WPEWAIPKGP GKDSNKP

Arabidopsis Description

Gelsolin protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ24]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.