Factsheet for Bra025069.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010037.1-P
Bra011966.1-P
Bra020485.1-P
Bra020636.1-P
Bra025975.1-P
Bra030508.1-P
Bra030989.1-P
Bra033338.1-P
Bra035499.1-P
Bra036534.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45600.1	Bra030508.1-P	AT1G02680.1	17340043
AT5G45600.1	Bra033338.1-P	AT1G02680.1	17340043
AT5G45600.1	Bra025975.1-P	AT1G17440.1	17340043
AT5G45600.1	Bra030989.1-P	AT1G17440.1	17340043
AT5G45600.1	Bra035499.1-P	AT1G32750.1	17340043
AT5G45600.1	Bra011966.1-P	AT2G28240.1	21798944
AT5G45600.1	Bra020485.1-P	AT5G25150.1	17340043
AT5G45600.1	Bra036534.1-P	AT5G25150.1	17340043
AT5G45600.1	Bra010037.1-P	AT5G49400.1	21798944
AT5G45600.1	Bra020636.1-P	AT5G49400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39435	Canola	nucleus	100.0	100.0
AT5G45600.1	Thale cress	nucleus	93.1	90.67
KRH24348	Soybean	nucleus	75.1	71.79
VIT_03s0038g00960.t01	Wine grape	cytosol, nucleus, peroxisome	72.41	69.23
Solyc04g077290.1.1	Tomato	nucleus	70.5	67.15
PGSC0003DMT400012607	Potato	nucleus	70.11	66.79
Bra039907.1-P	Field mustard	cytosol	49.81	50.39

Protein Annotations

MapMan:12.4.6.2	MapMan:15.3.5.3.14	Gene3D:2.60.40.1970	EnsemblPlantsGene:Bra025069	EnsemblPlants:Bra025069.1	EnsemblPlants:Bra025069.1-P
ncoils:Coil	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009791	GO:GO:0009908	GO:GO:0009909
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0035267	GO:GO:0043981	GO:GO:0048510
GO:GO:0090239	GO:GO:2000028	InterPro:IPR005033	InterPro:IPR038704	UniProt:M4E8G3	PFAM:PF03366
PFscan:PS51037	PANTHER:PTHR23195	PANTHER:PTHR23195:SF39	UniParc:UPI000253FC54	InterPro:YEAST_sf	InterPro:YEATS
SEG:seg	:	:	:	:	:

Description

AT5G45600 (E=9e-134) GAS41, TAF14B | GAS41; protein binding

Coordinates

chrA06:-:24982226..24983469

Molecular Weight (calculated)

29628.2 Da

IEP (calculated)

6.864

GRAVY (calculated)

-0.595

Length

261 amino acids

Sequence
(BLAST)

001: MTKQAQDPPE TSEPTLKSLR TKMTKSDEKK KLKDIEISVP LVYGNIAYWL GKKASEYQSH KWTVYVRGAT NEDISVVIKK VVFQLHSSFN NPTRVIEEPP
101: FEVSESGWGE FEIAITLHFH SDVCDKPLSL YHHLKLYPED ESGPLTMKKP VVVEHYDEIV FPDPCESFLA RVQNHPALTF PRLPSGYNLP APMQVDDNGK
201: KKRGDTKDHS LGQWFTSFSE ADELLQLAAA RQQVQAHIAK LRRQISLLEG QNQTIKTGSD P

Best Arabidopsis Sequence Match ( AT5G45600.2 )
(BLAST)

001: MTNSSSSKKQ AQDQPETSEP TLKSLKTKMT KSDEKKKLKD IEISVPIVYG NVAFWLGKKA SEYQSHKWAV YVRGATNEDI SVVVKKVVFQ LHSSFNSPTR
101: VIEEPPFEVS ESGWGEFEIA MTLHFHSDVC DKPLSLYHHL KLYPEDESGP LTMKKPVVVE SYDEIVFPDP SESFLARVQN HPALTFPRLP SGYNLPAPMQ
201: VEDTGKKKRG DTKDHSLGQW FMSFSEADEL LQLAAARQQV QAHIAKLRRQ ISLLEGQNQT VKTGSDL

Arabidopsis Description

TAF14BTranscription initiation factor TFIID subunit 14b [Source:UniProtKB/Swiss-Prot;Acc:Q9FH40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.