Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04547 | Canola | nucleus | 88.61 | 97.9 |
| AT2G28240.1 | Thale cress | nucleus | 48.58 | 38.79 |
Protein Annotations
Description
AT2G28240 (E=1e-047) | hydroxyproline-rich glycoprotein family protein
Coordinates
chrA07:+:10885215..10887141
Molecular Weight (calculated)
56674.0 Da
IEP (calculated)
6.774
GRAVY (calculated)
-0.688
Length
527 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTAENEAT TVHITSPQIL TASAEDQLCD VEMLPVPEGY MTTTTTSHDA DTVLDQEFVV PFPDPASTLD IHGSARSHQG VQGTCSMPSS SEQMAFRAAS
101: SVNHSAAVHE NGVQPPNISH GGSTPLANNP TMGQNPPRHL FSDPYEYELE KIRIEEENLK KSVDETTSQL MAELERKMAE ARSEFDKESQ EFDAKVMEVE
201: TRMGLVRTGS LLGNAFVSKC SERSASNDLA AVRAAMISQH STQQQQAVQT NTHMSSTAPP RVRPHQESTR LSTSAPPRPS VIAVDDDPVP NSSASLPHLP
301: RRPMTQPSPM SQQTVQAAHT HVNSTAPTPP PVTAVEPQTP NSSGPLHHLP RRPTTQPSPM SQQTAQAAHT HVNSTTPPPP PVTAVGPQAP NHLRPLARFP
401: QAVAQSNTNV NSSTPLPRPS VTTEGLPLHS PLSNTPRPRP RPVISNMTPP SSSSPPVRGP APHIVRASAP HLARRRAPHL RQYGSFPAPT FAAAAATTQP
501: RRSVQEQEQQ QQQEKSNGGL VNLSDED
101: SVNHSAAVHE NGVQPPNISH GGSTPLANNP TMGQNPPRHL FSDPYEYELE KIRIEEENLK KSVDETTSQL MAELERKMAE ARSEFDKESQ EFDAKVMEVE
201: TRMGLVRTGS LLGNAFVSKC SERSASNDLA AVRAAMISQH STQQQQAVQT NTHMSSTAPP RVRPHQESTR LSTSAPPRPS VIAVDDDPVP NSSASLPHLP
301: RRPMTQPSPM SQQTVQAAHT HVNSTAPTPP PVTAVEPQTP NSSGPLHHLP RRPTTQPSPM SQQTAQAAHT HVNSTTPPPP PVTAVGPQAP NHLRPLARFP
401: QAVAQSNTNV NSSTPLPRPS VTTEGLPLHS PLSNTPRPRP RPVISNMTPP SSSSPPVRGP APHIVRASAP HLARRRAPHL RQYGSFPAPT FAAAAATTQP
501: RRSVQEQEQQ QQQEKSNGGL VNLSDED
001: MVPMETQEVT DSLPKAQSKS GSTQLDGPGM VSSANIPEVL TEDMVCDTVM PPVSVSGAAS LELPLNVEEA PLIREESNRT SHDADAILVQ EFSSRFPDHA
101: SILDIQGSAR SDQRAQGTGC PPSSSVPVQN ITTAAEHWTS TSTPLVNHSE DVVEGGVQPP NVLHSRLTVN ASAVTSLPNN HMGQSPRLHL SSFSDICDHE
201: LEKLSREQGT LLKSFEETTL ELKAELERKM AEARSEYDRK SQEVDAAYNA QAKKNEALRS LVVMNSLLAN AYKSTCPVKS AATDTATVRA PRSSQHSTQQ
301: QQAVQTNRHM NSTAPPRPSV TAAEPMNSAA PPRPSVTAAE PMNSTAPPRP SVTAAEATPP NLSAPLPHCN TPQPSPISQQ AAVESNTQMQ STALPRPSVT
401: AEARPLHQPH SNTPQPRPIP QKALVQANTD INSTALPRPL VTAEAPPLHQ SSCKAPQPKP ISQQPAVQSK TDIINSTALP RPSVTTEARP LHQPRSKTPQ
501: PKPVSQPPAK QSNTEINSTP HPRPSVTSKA ISLQSPPCNT PQPRPPPLIS NHTPTSYQPA SAPPVHGIAR RTMAPHLRSS RAPNSAAAPS TYPRLAQEQQ
601: KQQQKKSNSS LVYLSDDD
101: SILDIQGSAR SDQRAQGTGC PPSSSVPVQN ITTAAEHWTS TSTPLVNHSE DVVEGGVQPP NVLHSRLTVN ASAVTSLPNN HMGQSPRLHL SSFSDICDHE
201: LEKLSREQGT LLKSFEETTL ELKAELERKM AEARSEYDRK SQEVDAAYNA QAKKNEALRS LVVMNSLLAN AYKSTCPVKS AATDTATVRA PRSSQHSTQQ
301: QQAVQTNRHM NSTAPPRPSV TAAEPMNSAA PPRPSVTAAE PMNSTAPPRP SVTAAEATPP NLSAPLPHCN TPQPSPISQQ AAVESNTQMQ STALPRPSVT
401: AEARPLHQPH SNTPQPRPIP QKALVQANTD INSTALPRPL VTAEAPPLHQ SSCKAPQPKP ISQQPAVQSK TDIINSTALP RPSVTTEARP LHQPRSKTPQ
501: PKPVSQPPAK QSNTEINSTP HPRPSVTSKA ISLQSPPCNT PQPRPPPLIS NHTPTSYQPA SAPPVHGIAR RTMAPHLRSS RAPNSAAAPS TYPRLAQEQQ
601: KQQQKKSNSS LVYLSDDD
Arabidopsis Description
ATP-dependent helicase family protein [Source:UniProtKB/TrEMBL;Acc:Q84JK0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.