Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04547 | Canola | nucleus | 35.61 | 49.27 |
| CDX71367 | Canola | nucleus | 34.85 | 48.83 |
| Bra011966.1-P | Field mustard | nucleus | 38.79 | 48.58 |
Protein Annotations
| MapMan:35.2 | EntrezGene:817370 | UniProt:A0A178VZ81 | ProteinID:AEC08094.1 | ArrayExpress:AT2G28240 | EnsemblPlantsGene:AT2G28240 |
| RefSeq:AT2G28240 | TAIR:AT2G28240 | RefSeq:AT2G28240-TAIR-G | EnsemblPlants:AT2G28240.1 | TAIR:AT2G28240.1 | Unigene:At.38643 |
| EMBL:BT003975 | EMBL:BT004948 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004386 |
| GO:GO:0005575 | GO:GO:0006139 | GO:GO:0006342 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0040029 | RefSeq:NP_180391.2 | ProteinID:OAP11268.1 |
| PO:PO:0000293 | PO:PO:0001078 | PO:PO:0007611 | PO:PO:0009010 | PO:PO:0009046 | PANTHER:PTHR35116 |
| PANTHER:PTHR35116:SF2 | UniProt:Q84JK0 | UniParc:UPI000000C213 | SEG:seg | : | : |
Description
ATP-dependent helicase family protein [Source:UniProtKB/TrEMBL;Acc:Q84JK0]
Coordinates
chr2:+:12039208..12042175
Molecular Weight (calculated)
70684.6 Da
IEP (calculated)
8.135
GRAVY (calculated)
-0.679
Length
660 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPMETQEVT DSLPKAQSKS GSTQLDGPGM VSSANIPEVL TEDMVCDTVM PPVSVSGAAS LELPLNVEEA PLIREESNRT SHDADAILVQ EFSSRFPDHA
101: SILDIQGSAR SDQRAQGTGC PPSSSVPVQN ITTAAEHWTS TSTPLVNHSE DVVEGGVQPP NVLHSRLTVN ASAVTSLPNN HMGQSPRLHL SSFSDICDHE
201: LEKLSREQGT LLKSFEETTL ELKAELERKM AEARSEYDRK SQEVDAAYNA QAKKNEALRS LVVMNSLLAN AYKSTCPVKS AATDTATVRA PRSSQHSTQQ
301: QQAVQTNRHM NSTAPPRPSV TAAEPMNSAA PPRPSVTAAE PMNSTAPPRP SVTAAEATPP NLSAPLPHCN TPQPSPISQQ AAVESNTQMQ STALPRPSVT
401: AEARPLHQPH SNTSQPRPIP QQALAQSNTN ITSTALPRPS ITAEARLLHQ PHSNTPQPRP IPQKALVQAN TDINSTALPR PLVTAEAPPL HQSSCKAPQP
501: KPISQQPAVQ SKTDIINSTA LPRPSVTTEA RPLHQPRSKT PQPKPVSQPP AKQSNTEINS TPHPRPSVTS KAISLQSPPC NTPQPRPPPL ISNHTPTSYQ
601: PASAPPVHGI ARRTMAPHLR SSRAPNSAAA PSTYPRLAQE QQKQQQKKSN SSLVYLSDDD
101: SILDIQGSAR SDQRAQGTGC PPSSSVPVQN ITTAAEHWTS TSTPLVNHSE DVVEGGVQPP NVLHSRLTVN ASAVTSLPNN HMGQSPRLHL SSFSDICDHE
201: LEKLSREQGT LLKSFEETTL ELKAELERKM AEARSEYDRK SQEVDAAYNA QAKKNEALRS LVVMNSLLAN AYKSTCPVKS AATDTATVRA PRSSQHSTQQ
301: QQAVQTNRHM NSTAPPRPSV TAAEPMNSAA PPRPSVTAAE PMNSTAPPRP SVTAAEATPP NLSAPLPHCN TPQPSPISQQ AAVESNTQMQ STALPRPSVT
401: AEARPLHQPH SNTSQPRPIP QQALAQSNTN ITSTALPRPS ITAEARLLHQ PHSNTPQPRP IPQKALVQAN TDINSTALPR PLVTAEAPPL HQSSCKAPQP
501: KPISQQPAVQ SKTDIINSTA LPRPSVTTEA RPLHQPRSKT PQPKPVSQPP AKQSNTEINS TPHPRPSVTS KAISLQSPPC NTPQPRPPPL ISNHTPTSYQ
601: PASAPPVHGI ARRTMAPHLR SSRAPNSAAA PSTYPRLAQE QQKQQQKKSN SSLVYLSDDD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.