Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04547 | Canola | nucleus | 83.44 | 82.39 |
| AT2G28240.1 | Thale cress | nucleus | 48.83 | 34.85 |
Protein Annotations
| EnsemblPlants:CDX71367 | EnsemblPlantsGene:GSBRNA2T00148163001 | ncoils:Coil | PANTHER:PTHR35116 | PANTHER:PTHR35116:SF2 | ProteinID:CDX71367 |
| ProteinID:CDX71367.1 | SEG:seg | UniParc:UPI0004EEB1C7 | MapMan:35.2 | : | : |
Description
BnaC04g16020D
Coordinates
chrLK031793:-:169496..171958
Molecular Weight (calculated)
50838.1 Da
IEP (calculated)
6.343
GRAVY (calculated)
-0.717
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: MMASTAENEA IVHSTSPQIL TTSAAEDQVC DAEMLPVPED YMTTTTSHDA DTVLDQEFVV PFPDPASTLD IHGPARSDQS VQVNHSEAVH ENGVQPPNIS
101: HGAPLPMGHN PPRHLFSDPY EYELEKIRIE EENLKKSVEE ATSQLMAELD RKMAEARSEF DKETQEFDAK VMEVDARMGL VRTGSLLGNA FVSKCSERSA
201: SNDLAAVRAA MISQHSTQQQ QAVQTNTQMS STAPPRVRPQ QESTRLSTSA PPRPSQTVQA HTHVNSTAPT PPSVTSVEPQ TPNSSGPLHH LPRPTTQPSP
301: MSQQTVHVNS TAPTPPPVTA VEPQTPNHLR PLARFPQPSL ASQQAVSQSN TNVNSSTPLP RPSAITEGLP LHSPLSNTPR PRPRPVISNV TPPSSSSPPV
401: RGPAPHILRA SAPHLARRPA PHLRQYGSFP APTSAAAAPT THPRRSVQEQ EQQQQQQGKS NGGLVNLSDE D
101: HGAPLPMGHN PPRHLFSDPY EYELEKIRIE EENLKKSVEE ATSQLMAELD RKMAEARSEF DKETQEFDAK VMEVDARMGL VRTGSLLGNA FVSKCSERSA
201: SNDLAAVRAA MISQHSTQQQ QAVQTNTQMS STAPPRVRPQ QESTRLSTSA PPRPSQTVQA HTHVNSTAPT PPSVTSVEPQ TPNSSGPLHH LPRPTTQPSP
301: MSQQTVHVNS TAPTPPPVTA VEPQTPNHLR PLARFPQPSL ASQQAVSQSN TNVNSSTPLP RPSAITEGLP LHSPLSNTPR PRPRPVISNV TPPSSSSPPV
401: RGPAPHILRA SAPHLARRPA PHLRQYGSFP APTSAAAAPT THPRRSVQEQ EQQQQQQGKS NGGLVNLSDE D
001: MVPMETQEVT DSLPKAQSKS GSTQLDGPGM VSSANIPEVL TEDMVCDTVM PPVSVSGAAS LELPLNVEEA PLIREESNRT SHDADAILVQ EFSSRFPDHA
101: SILDIQGSAR SDQRAQGTGC PPSSSVPVQN ITTAAEHWTS TSTPLVNHSE DVVEGGVQPP NVLHSRLTVN ASAVTSLPNN HMGQSPRLHL SSFSDICDHE
201: LEKLSREQGT LLKSFEETTL ELKAELERKM AEARSEYDRK SQEVDAAYNA QAKKNEALRS LVVMNSLLAN AYKSTCPVKS AATDTATVRA PRSSQHSTQQ
301: QQAVQTNRHM NSTAPPRPSV TAAEPMNSAA PPRPSVTAAE PMNSTAPPRP SVTAAEATPP NLSAPLPHCN TPQPSPISQQ AAVESNTQMQ STALPRPSVT
401: AEARPLHQPH SNTSQPRPIP QQALAQSNTN ITSTALPRPS ITAEARLLHQ PHSNTPQPRP IPQKALVQAN TDINSTALPR PLVTAEAPPL HQSSCKAPQP
501: KPISQQPAVQ SKTDIINSTA LPRPSVTTEA RPLHQPRSKT PQPKPVSQPP AKQSNTEINS TPHPRPSVTS KAISLQSPPC NTPQPRPPPL ISNHTPTSYQ
601: PASAPPVHGI ARRTMAPHLR SSRAPNSAAA PSTYPRLAQE QQKQQQKKSN SSLVYLSDDD
101: SILDIQGSAR SDQRAQGTGC PPSSSVPVQN ITTAAEHWTS TSTPLVNHSE DVVEGGVQPP NVLHSRLTVN ASAVTSLPNN HMGQSPRLHL SSFSDICDHE
201: LEKLSREQGT LLKSFEETTL ELKAELERKM AEARSEYDRK SQEVDAAYNA QAKKNEALRS LVVMNSLLAN AYKSTCPVKS AATDTATVRA PRSSQHSTQQ
301: QQAVQTNRHM NSTAPPRPSV TAAEPMNSAA PPRPSVTAAE PMNSTAPPRP SVTAAEATPP NLSAPLPHCN TPQPSPISQQ AAVESNTQMQ STALPRPSVT
401: AEARPLHQPH SNTSQPRPIP QQALAQSNTN ITSTALPRPS ITAEARLLHQ PHSNTPQPRP IPQKALVQAN TDINSTALPR PLVTAEAPPL HQSSCKAPQP
501: KPISQQPAVQ SKTDIINSTA LPRPSVTTEA RPLHQPRSKT PQPKPVSQPP AKQSNTEINS TPHPRPSVTS KAISLQSPPC NTPQPRPPPL ISNHTPTSYQ
601: PASAPPVHGI ARRTMAPHLR SSRAPNSAAA PSTYPRLAQE QQKQQQKKSN SSLVYLSDDD
Arabidopsis Description
ATP-dependent helicase family protein [Source:UniProtKB/TrEMBL;Acc:Q84JK0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.