Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH39814 | Soybean | cytosol, nucleus | 41.76 | 92.68 |
| VIT_03s0038g00960.t01 | Wine grape | cytosol, nucleus, peroxisome | 78.39 | 78.39 |
| AT5G45600.1 | Thale cress | nucleus | 75.09 | 76.49 |
| Bra025069.1-P | Field mustard | nucleus | 71.79 | 75.1 |
| CDY39435 | Canola | nucleus | 71.79 | 75.1 |
| CDY38963 | Canola | nucleus | 73.26 | 74.91 |
| PGSC0003DMT400012607 | Potato | nucleus | 72.89 | 72.63 |
| Solyc04g077290.1.1 | Tomato | nucleus | 72.89 | 72.63 |
| KRH28792 | Soybean | nucleus | 67.4 | 65.95 |
| KRH76662 | Soybean | nucleus | 67.4 | 65.95 |
| KRH66164 | Soybean | extracellular, mitochondrion | 27.47 | 58.59 |
| KRH55119 | Soybean | extracellular | 29.67 | 52.6 |
Protein Annotations
| EntrezGene:100790602 | MapMan:12.4.6.2 | MapMan:15.3.5.3.14 | Gene3D:2.60.40.1970 | EMBL:ACUP02007174 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_12G035600 | GO:GO:0000003 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009909 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0035267 | GO:GO:0043981 | GO:GO:0048510 |
| GO:GO:0090239 | GO:GO:2000028 | UniProt:I1LPV8 | InterPro:IPR005033 | InterPro:IPR038704 | EnsemblPlants:KRH24348 |
| ProteinID:KRH24348 | ProteinID:KRH24348.1 | PFAM:PF03366 | PFscan:PS51037 | PANTHER:PTHR23195 | PANTHER:PTHR23195:SF39 |
| UniParc:UPI000233CBEF | InterPro:YEAST_sf | InterPro:YEATS | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr12:+:2597690..2600977
Molecular Weight (calculated)
30760.2 Da
IEP (calculated)
7.137
GRAVY (calculated)
-0.629
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MTNSSSSTKH GQDQPDLSGP TPKSQRTKMG KSEDNDKKNL GKKLKDVEIS IPIVYGNVAF WLGKKASEYQ SHKWTVYVRG ATNEDLGTII KHAVFQLHSS
101: FNNPTRVVES PPFELSESGW GEFEVSITLY FHSDVCDKPL NLYHHLKLYP EDENSSMSTK KPVVVEFYDE IVFPDPSEAF LARVQNHPAV NLPRLPAGLT
201: LPPSIPVEDA SKRRKGDTKD HSLSQWFMNF SEADELLQLA AARQQVQAHI AKLRRQISLI DGQHQQFKSS SDL
101: FNNPTRVVES PPFELSESGW GEFEVSITLY FHSDVCDKPL NLYHHLKLYP EDENSSMSTK KPVVVEFYDE IVFPDPSEAF LARVQNHPAV NLPRLPAGLT
201: LPPSIPVEDA SKRRKGDTKD HSLSQWFMNF SEADELLQLA AARQQVQAHI AKLRRQISLI DGQHQQFKSS SDL
001: MTNSSSSKKQ AQDQPETSEP TLKSLKTKMT KSDEKQKKLK DIEISVPIVY GNVAFWLGKK ASEYQSHKWA VYVRGATNED ISVVVKKVVF QLHSSFNSPT
101: RVIEEPPFEV SESGWGEFEI AMTLHFHSDV CDKPLSLYHH LKLYPEDESG PLTMKKPVVV ESYDEIVFPD PSESFLARVQ NHPALTFPRL PSGYNLPAPM
201: QVEDTGKKKR GDTKDHSLGQ WFMSFSEADE LLQLAAARQQ VQAHIAKLRR QISLLEGQNQ TVKTGSDL
101: RVIEEPPFEV SESGWGEFEI AMTLHFHSDV CDKPLSLYHH LKLYPEDESG PLTMKKPVVV ESYDEIVFPD PSESFLARVQ NHPALTFPRL PSGYNLPAPM
201: QVEDTGKKKR GDTKDHSLGQ WFMSFSEADE LLQLAAARQQ VQAHIAKLRR QISLLEGQNQ TVKTGSDL
Arabidopsis Description
TAF14BTranscription initiation factor TFIID subunit 14b [Source:UniProtKB/Swiss-Prot;Acc:Q9FH40]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.